Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...   105   4e-24
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    44   1e-05
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    26   3.9  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   3.9  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   5.2  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   5.2  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   6.8  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    25   6.8  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   9.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   9.0  

>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score =  105 bits (252), Expect = 4e-24
 Identities = 50/106 (47%), Positives = 71/106 (66%), Gaps = 5/106 (4%)
 Frame = -2

Query: 415 LIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLY----PKPDEWP 248
           LI KLRK QE+ LR  AKKG  KEHAKW+PT+ V+FEYDP N ++HT Y        EWP
Sbjct: 144 LICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYDPWNKLQHTDYWFENDADAEWP 203

Query: 247 KSEHTELNEDQYEAD-FNWEAKPNKFFYNVESSGALKPENIVLMGI 113
           KS++ +  E   E + FN++ +P +F+ +VES G++ P  I++ G+
Sbjct: 204 KSKNADWEEPPREGEPFNFQEEPRRFYMDVESVGSIPPNEIMVQGL 249


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 19/42 (45%), Positives = 29/42 (69%)
 Frame = -2

Query: 421 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 296
           +I++ KLR GQE+ L A+A  G G++HAK++P A  S+   P
Sbjct: 197 DIVVAKLRPGQEIDLEAHAILGIGQDHAKFSPVATASYRLLP 238


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +1

Query: 148 LLMILHYKR-ICLVSLPS*SPPHTDLH*VQCARFWAIHLVLD-ITYVSLYYQGHIQRTHQ 321
           LLM +  +  + L S P  SP        +  R   I+++ D ITYV  Y +  +Q+T++
Sbjct: 348 LLMYIDSRADLLLKSNPQVSPTSERQVWAKIYRDSQINILQDSITYVKNYMEESLQKTYK 407

Query: 322 QLDSILHALSQN 357
            L ++L  L  N
Sbjct: 408 PLPNLLQYLILN 419


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 280 HTLYPKPDEWPKSEHTELNEDQYEAD-FNWEAKPNKFFYNV 161
           H  +P PD W  S  T + +  Y+ D  N + +   F Y++
Sbjct: 57  HDFFPSPDNWRMSFITVILDRWYDGDPSNNDIEKTPFEYDI 97


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 206  RLILIFIKFSVLAFGP-FIWFWI*RMSHYIIRVIFKGHTSSWIPF 337
            R +L+ +  ++  + P  I+FWI  ++  I   IF  H  SW  F
Sbjct: 1491 RTLLMLLFGTMTVWIPHLIYFWISTLAMCISPFIFNPHQFSWTDF 1535


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 308  KGHTSSWIPFCML 346
            KGH  SWI FC L
Sbjct: 1486 KGHAHSWIGFCRL 1498


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 211  HTDLH*VQCARFWAIHLVLDITYVSLYYQGHIQRTHQQLDSILHAL 348
            H D+       F   H ++ +   S +Y+ HI   HQ   S LH L
Sbjct: 1908 HPDISLNMTPNFKPSHELVQLINSSPFYRKHIISVHQVTRSDLHVL 1953


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/68 (19%), Positives = 31/68 (45%)
 Frame = +1

Query: 247 WAIHLVLDITYVSLYYQGHIQRTHQQLDSILHALSQNLFLHMPEASIPDPCVT**SIFHL 426
           +A+  +L+       Y+ + Q   + +D +LH +   + +H    ++ +   T     HL
Sbjct: 65  YALDSLLEYQQNEEAYEKNFQFIQKLIDDLLHVIEGLVLIHPKSQTLFEDKATLRLFIHL 124

Query: 427 LHHNRPGL 450
           L  ++P +
Sbjct: 125 LQPSQPSM 132


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = -2

Query: 499 KSSDPRVVPVTSRHRDEDQADYGEAD------EILIIKLRKGQELKL 377
           KS  PRV P+T +  D D+A++ E        +  I+K R  QEL L
Sbjct: 390 KSKAPRVTPLTHKTND-DEANHSETSSGSSLAKKPILKRRTPQELLL 435


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 280 HTLYPKPDEWPKSEHTELNEDQYEAD-FNWEAKPNKFFYNVESSG 149
           H  +P PD+W    +T + +   + D  N EA    + Y++  +G
Sbjct: 52  HQYHPSPDDWQVPFYTVILDKWKDGDPRNNEANNTIYEYDIYETG 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,044,104
Number of Sequences: 5004
Number of extensions: 42076
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)