Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310B05f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0053 + 873918-874411,875255-875492,875682-875702 79 3e-15
03_02_0668 - 10290541-10290644,10290777-10290911,10291812-102919... 45 3e-05
02_04_0003 + 18832467-18832543,18832627-18832849,18832985-188333... 30 1.3
02_05_0447 + 29096853-29097033,29097812-29098146,29098651-290987... 29 3.0
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075... 28 4.0
08_02_0895 + 22351418-22351553,22352991-22353112,22353228-22353554 28 5.2
03_02_0226 - 6569657-6570388,6570461-6570748,6570846-6571303,657... 28 5.2
06_03_0832 + 25190755-25190960,25191869-25191997,25192079-251923... 27 6.9
05_05_0179 + 23022985-23023190,23024099-23024227,23024309-230245... 27 6.9
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 27 6.9
03_02_0263 - 6948618-6948818,6948909-6948971,6949078-6949146,694... 27 6.9
08_02_1130 + 24517319-24518149,24519374-24519868,24519954-245201... 27 9.1
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 27 9.1
>09_01_0053 + 873918-874411,875255-875492,875682-875702
Length = 250
Score = 78.6 bits (185), Expect = 3e-15
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 9/84 (10%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDE---------DQADYGEADEILIIKLRKGQELKLRAYA 365
VT+ DL+S+DP+V PV + D A + ILI+KLR+GQEL+LRA A
Sbjct: 125 VTSNDLRSTDPKVCPVDQARAYQHALGGTEPFDTAAAADQRGILIVKLRRGQELRLRAIA 184
Query: 364 KKGFGKEHAKWNPTAGVSFEYDPD 293
+KG GK+HAKW+P A V+F Y+P+
Sbjct: 185 RKGIGKDHAKWSPAATVTFMYEPE 208
>03_02_0668 -
10290541-10290644,10290777-10290911,10291812-10291905,
10291994-10292089,10292458-10292639,10293578-10293658,
10293746-10293875,10293996-10294181,10294567-10294692
Length = 377
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = -2
Query: 421 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTL 272
+I I +L GQ ++L +A KG GK HAKW+P A + P+ ++R +
Sbjct: 225 DITIARLGPGQAIELEVHAVKGIGKVHAKWSPVATAWYRMLPEVVLREEI 274
>02_04_0003 +
18832467-18832543,18832627-18832849,18832985-18833375,
18833766-18834223,18834320-18834607,18834679-18835398
Length = 718
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -2
Query: 274 LYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALK 140
+Y K ++ + H LNE Q EA+F K YN+ESS L+
Sbjct: 267 IYSKRSKFKEEFHRVLNEPQTEAEFEKAWKDLMEQYNLESSVYLR 311
>02_05_0447 +
29096853-29097033,29097812-29098146,29098651-29098782,
29098870-29099142,29099295-29099477
Length = 367
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 323 SWIPFCMLFPKTFFCICPK 379
SW+ LFP F C CPK
Sbjct: 229 SWLRLAALFPLHFVCACPK 247
>04_04_0491 -
25605560-25605684,25605826-25605928,25606026-25607592,
25608694-25610198
Length = 1099
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 246 KASTLNLMKISMRRTSTGKRNQTNSFIM*NHQELLNQKI 130
+AS L K+ + R+S GKR + S + + + LN+KI
Sbjct: 99 RASRLERFKLQLLRSSAGKRKRELSSLFSSSPDRLNRKI 137
>08_02_0895 + 22351418-22351553,22352991-22353112,22353228-22353554
Length = 194
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 190 LPS*SPPHTDLH*VQCARFWAIHLVLDITYVSLYYQGHIQRT 315
LPS S H LH + CA W + +T L+ GHI T
Sbjct: 60 LPSGSVSH--LHRIPCAETWHFYKGEPLTVFELHDDGHIDLT 99
>03_02_0226 -
6569657-6570388,6570461-6570748,6570846-6571303,
6571694-6571828,6571829-6572084,6572229-6572451,
6572533-6572661,6573570-6573775
Length = 808
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 274 LYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALK 140
+Y K + + H LNE Q EA+F+ YN+ESS L+
Sbjct: 353 IYSKRSSFKQEFHRVLNEPQTEAEFDKAWSDLMEQYNLESSVYLR 397
>06_03_0832 +
25190755-25190960,25191869-25191997,25192079-25192301,
25192447-25192702,25193228-25193685,25193783-25194070,
25194143-25194874
Length = 763
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 274 LYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALK 140
+Y K + + H LNE Q EA+F YN+ESS L+
Sbjct: 308 IYSKRSSFKQEFHRVLNEPQTEAEFEKAWSDLMEQYNLESSVYLR 352
>05_05_0179 +
23022985-23023190,23024099-23024227,23024309-23024531,
23024674-23024929,23025455-23025912,23026009-23026296,
23026369-23027100
Length = 763
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 274 LYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALK 140
+Y K + + H LNE Q EA+F YN+ESS L+
Sbjct: 308 IYSKRSSFKQEFHRVLNEPQTEAEFEKAWSDLMEQYNLESSVYLR 352
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 16 IRFYEIN*LLRHHFVPLALTALEDSVICFSVQLFP 120
+ FYE N LL++ +PLAL +DS + S FP
Sbjct: 540 LEFYEENKLLQNSSLPLALEKDKDSRLLASPLKFP 574
>03_02_0263 -
6948618-6948818,6948909-6948971,6949078-6949146,
6949232-6949297,6949380-6949526,6949608-6949702,
6949845-6950016,6952187-6952318,6953581-6953674,
6954067-6954184,6955884-6957057
Length = 776
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 309 KDTPAVGFHFACSFPKPFFAY 371
+D PA G HF C P P Y
Sbjct: 462 QDAPAAGIHFDCIIPLPINPY 482
>08_02_1130 +
24517319-24518149,24519374-24519868,24519954-24520179,
24520267-24520291,24520925-24521234,24521328-24521888
Length = 815
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -2
Query: 514 TTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKG 356
+T+ S DP++ R DED +Y E +E L+ + G++ A G
Sbjct: 23 STSASPSHDPKITQEEKRWEDEDD-EYEEEEEELLYDVDDGEDAPAEACVLTG 74
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 448 DQADYGEADEILIIKLRKGQE 386
+ D GEAD IL IKL++G E
Sbjct: 768 EMKDLGEADVILNIKLQRGDE 788
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,513,329
Number of Sequences: 37544
Number of extensions: 248997
Number of successful extensions: 612
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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