Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310B05f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40270| Best HMM Match : No HMM Matches (HMM E-Value=.) 138 3e-33
SB_24025| Best HMM Match : RNA_pol_A_bac (HMM E-Value=0.024) 45 3e-05
SB_10588| Best HMM Match : Sec63 (HMM E-Value=0) 30 1.0
SB_49670| Best HMM Match : TIR (HMM E-Value=1.2) 30 1.3
SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54) 29 3.1
SB_1116| Best HMM Match : THAP (HMM E-Value=0.00013) 28 4.1
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_26235| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_40270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 138 bits (334), Expect = 3e-33
Identities = 58/77 (75%), Positives = 68/77 (88%)
Frame = -2
Query: 388 ELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYE 209
ELKLRA+AKKGF KEHAKWNPTAGV+FEYDPDN +RHT YP+P+EWPKSE+TEL EDQY+
Sbjct: 1 ELKLRAFAKKGFAKEHAKWNPTAGVAFEYDPDNALRHTTYPRPEEWPKSEYTELEEDQYQ 60
Query: 208 ADFNWEAKPNKFFYNVE 158
A F+ AK +KF+ NVE
Sbjct: 61 APFDPNAKADKFYINVE 77
>SB_24025| Best HMM Match : RNA_pol_A_bac (HMM E-Value=0.024)
Length = 59
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = -2
Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 326
++ILI KLR GQEL ++ +A KG GK+HAK++P
Sbjct: 11 NDILIAKLRPGQELDIKMHAVKGVGKDHAKFSP 43
>SB_10588| Best HMM Match : Sec63 (HMM E-Value=0)
Length = 1047
Score = 30.3 bits (65), Expect = 1.0
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Frame = +1
Query: 82 EDSVICFSVQLF-PLI-QYFLV*ELLMILHYKRICLVS-----LPS*SPPHTDLH*VQCA 240
E + F++ +F PL QY++ L + +C +S LP PPHT+L +Q
Sbjct: 89 EPQSLVFTIPIFEPLPPQYYVHAVSDRWLGAETVCAISFQHLILPERHPPHTELLDLQPL 148
Query: 241 RFWAIHLVLDITYVSLYYQGHIQRTHQQLDSILHALSQNLFLHMPEAS 384
A+H +++Y LY H Q+ ++ N+ L P S
Sbjct: 149 PISALH---NVSYELLYKFTHFNPVQTQVFHTVYNSDHNVLLGAPTGS 193
>SB_49670| Best HMM Match : TIR (HMM E-Value=1.2)
Length = 512
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 454 DEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPT 323
+ + A GEAD L + K Q+LK A++ G A+W T
Sbjct: 336 ESNVASSGEADSFLRVTYLKDQKLKSEAFSHSGDQLTTAEWEQT 379
>SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54)
Length = 341
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +1
Query: 94 ICFSVQLFPLIQYFLV*ELLMILHYK 171
ICF + ++ L+ +F++ +L +ILHYK
Sbjct: 46 ICF-ISIYTLLFFFILVQLCLILHYK 70
>SB_1116| Best HMM Match : THAP (HMM E-Value=0.00013)
Length = 331
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -2
Query: 355 FGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHT 233
F + W PT + E PD + + +PDE PK T
Sbjct: 76 FDENDVDWAPTLKLGDESKPDKPVPKSTRKRPDESPKDART 116
>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3003
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 286 MRHTLYPKPDEWPKSEHTELNEDQYEADFNW 194
+RHT+Y + P++ HT+ + E D +W
Sbjct: 16 LRHTMYKESPPSPRASHTDGDTAAQELDSDW 46
>SB_26235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 406
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 433 GEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 326
GE D ++I LR+ ++ + A KK GKE NP
Sbjct: 242 GEMDTLVIHHLRQKEKKEREAVLKKALGKELILQNP 277
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 140 TRKYCINGNSCTEKQITESSSAVSARGTK*C 48
T K C+NG SCT Q S VS K C
Sbjct: 379 TNKPCLNGGSCTNLQGDYRCSCVSGYCGKYC 409
>SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1020
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -3
Query: 318 VCPLNMTLII**DIRYIQNQMNGPKASTLNLMKISMRRTSTGKRNQTNSF 169
V P NMTL + DIR N ++ +TLN +++ T TN +
Sbjct: 79 VLPFNMTLGL--DIRDTCNLLSNALRATLNFVELRKHNQETNASQATNYY 126
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,840,980
Number of Sequences: 59808
Number of extensions: 293093
Number of successful extensions: 800
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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