Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310B05f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR542041-1|CAG46838.1| 275|Homo sapiens POLR2C protein. 221 9e-58
BC028157-1|AAH28157.1| 275|Homo sapiens polymerase (RNA) II (DN... 221 9e-58
BC003159-1|AAH03159.1| 275|Homo sapiens polymerase (RNA) II (DN... 221 9e-58
BC000409-1|AAH00409.1| 275|Homo sapiens polymerase (RNA) II (DN... 221 9e-58
AF008443-1|AAC14355.1| 275|Homo sapiens RNA polymerase II subun... 221 9e-58
AC004382-7|AAC24309.1| 275|Homo sapiens RNA polymerase II subun... 221 9e-58
J05448-1|AAA36586.1| 275|Homo sapiens protein ( Human RNA polym... 217 1e-56
AJ224144-1|CAA11843.1| 275|Homo sapiens RNA polymerase subunit ... 217 1e-56
AJ224143-1|CAA11842.1| 275|Homo sapiens RNA polymerase II subun... 217 1e-56
BC008863-1|AAH08863.1| 346|Homo sapiens polymerase (RNA) I poly... 50 7e-06
BC008118-1|AAH08118.1| 338|Homo sapiens POLR1C protein protein. 50 7e-06
AL355802-16|CAI42632.1| 200|Homo sapiens RP3-337H4.4 protein. 50 7e-06
AL355802-12|CAI42629.1| 346|Homo sapiens RP3-337H4.4 protein. 50 7e-06
AL355802-11|CAI42628.1| 314|Homo sapiens RP3-337H4.4 protein. 50 7e-06
AF008442-1|AAC14354.1| 346|Homo sapiens RNA polymerase I subuni... 50 7e-06
AL355802-15|CAI42633.1| 168|Homo sapiens RP3-337H4.4 protein. 33 0.61
>CR542041-1|CAG46838.1| 275|Homo sapiens POLR2C protein.
Length = 275
Score = 221 bits (541), Expect = 9e-58
Identities = 100/161 (62%), Positives = 125/161 (77%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
VT+ DL S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHA
Sbjct: 115 VTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
Query: 337 KWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVE 158
KWNPTAGV+FEYDPDN +RHT+YPKP+EWPKSE++EL+ED+ +A ++ KP +F+YNVE
Sbjct: 175 KWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVE 234
Query: 157 SSGALKPENIVLMGIXXXXXXXXXXXXXLAQEAQNDALAIN 35
S G+L+PE IVL + L+ E Q+D L IN
Sbjct: 235 SCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN 275
>BC028157-1|AAH28157.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 221 bits (541), Expect = 9e-58
Identities = 100/161 (62%), Positives = 125/161 (77%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
VT+ DL S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHA
Sbjct: 115 VTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
Query: 337 KWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVE 158
KWNPTAGV+FEYDPDN +RHT+YPKP+EWPKSE++EL+ED+ +A ++ KP +F+YNVE
Sbjct: 175 KWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVE 234
Query: 157 SSGALKPENIVLMGIXXXXXXXXXXXXXLAQEAQNDALAIN 35
S G+L+PE IVL + L+ E Q+D L IN
Sbjct: 235 SCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN 275
>BC003159-1|AAH03159.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 221 bits (541), Expect = 9e-58
Identities = 100/161 (62%), Positives = 125/161 (77%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
VT+ DL S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHA
Sbjct: 115 VTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
Query: 337 KWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVE 158
KWNPTAGV+FEYDPDN +RHT+YPKP+EWPKSE++EL+ED+ +A ++ KP +F+YNVE
Sbjct: 175 KWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVE 234
Query: 157 SSGALKPENIVLMGIXXXXXXXXXXXXXLAQEAQNDALAIN 35
S G+L+PE IVL + L+ E Q+D L IN
Sbjct: 235 SCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN 275
>BC000409-1|AAH00409.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 221 bits (541), Expect = 9e-58
Identities = 100/161 (62%), Positives = 125/161 (77%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
VT+ DL S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHA
Sbjct: 115 VTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
Query: 337 KWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVE 158
KWNPTAGV+FEYDPDN +RHT+YPKP+EWPKSE++EL+ED+ +A ++ KP +F+YNVE
Sbjct: 175 KWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVE 234
Query: 157 SSGALKPENIVLMGIXXXXXXXXXXXXXLAQEAQNDALAIN 35
S G+L+PE IVL + L+ E Q+D L IN
Sbjct: 235 SCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN 275
>AF008443-1|AAC14355.1| 275|Homo sapiens RNA polymerase II subunit
hRPB33 protein.
Length = 275
Score = 221 bits (541), Expect = 9e-58
Identities = 100/161 (62%), Positives = 125/161 (77%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
VT+ DL S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHA
Sbjct: 115 VTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
Query: 337 KWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVE 158
KWNPTAGV+FEYDPDN +RHT+YPKP+EWPKSE++EL+ED+ +A ++ KP +F+YNVE
Sbjct: 175 KWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVE 234
Query: 157 SSGALKPENIVLMGIXXXXXXXXXXXXXLAQEAQNDALAIN 35
S G+L+PE IVL + L+ E Q+D L IN
Sbjct: 235 SCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN 275
>AC004382-7|AAC24309.1| 275|Homo sapiens RNA polymerase II subunit
hRPB33 protein.
Length = 275
Score = 221 bits (541), Expect = 9e-58
Identities = 100/161 (62%), Positives = 125/161 (77%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
VT+ DL S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHA
Sbjct: 115 VTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
Query: 337 KWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVE 158
KWNPTAGV+FEYDPDN +RHT+YPKP+EWPKSE++EL+ED+ +A ++ KP +F+YNVE
Sbjct: 175 KWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVE 234
Query: 157 SSGALKPENIVLMGIXXXXXXXXXXXXXLAQEAQNDALAIN 35
S G+L+PE IVL + L+ E Q+D L IN
Sbjct: 235 SCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN 275
>J05448-1|AAA36586.1| 275|Homo sapiens protein ( Human RNA
polymerase subunit hRPB 33, mRNA. ).
Length = 275
Score = 217 bits (531), Expect = 1e-56
Identities = 99/161 (61%), Positives = 124/161 (77%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
VT+ DL S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHA
Sbjct: 115 VTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
Query: 337 KWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVE 158
KWNPTAGV+FEYDPDN +R T+YPKP+EWPKSE++EL+ED+ +A ++ KP +F+YNVE
Sbjct: 175 KWNPTAGVAFEYDPDNALRTTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVE 234
Query: 157 SSGALKPENIVLMGIXXXXXXXXXXXXXLAQEAQNDALAIN 35
S G+L+PE IVL + L+ E Q+D L IN
Sbjct: 235 SCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN 275
>AJ224144-1|CAA11843.1| 275|Homo sapiens RNA polymerase subunit
protein.
Length = 275
Score = 217 bits (531), Expect = 1e-56
Identities = 99/161 (61%), Positives = 124/161 (77%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
VT+ DL S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHA
Sbjct: 115 VTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
Query: 337 KWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVE 158
KWNPTAGV+FEYDPDN +R T+YPKP+EWPKSE++EL+ED+ +A ++ KP +F+YNVE
Sbjct: 175 KWNPTAGVAFEYDPDNALRTTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVE 234
Query: 157 SSGALKPENIVLMGIXXXXXXXXXXXXXLAQEAQNDALAIN 35
S G+L+PE IVL + L+ E Q+D L IN
Sbjct: 235 SCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN 275
>AJ224143-1|CAA11842.1| 275|Homo sapiens RNA polymerase II subunit
protein.
Length = 275
Score = 217 bits (531), Expect = 1e-56
Identities = 99/161 (61%), Positives = 124/161 (77%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
VT+ DL S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHA
Sbjct: 115 VTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
Query: 337 KWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVE 158
KWNPTAGV+FEYDPDN +R T+YPKP+EWPKSE++EL+ED+ +A ++ KP +F+YNVE
Sbjct: 175 KWNPTAGVAFEYDPDNALRTTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVE 234
Query: 157 SSGALKPENIVLMGIXXXXXXXXXXXXXLAQEAQNDALAIN 35
S G+L+PE IVL + L+ E Q+D L IN
Sbjct: 235 SCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN 275
>BC008863-1|AAH08863.1| 346|Homo sapiens polymerase (RNA) I
polypeptide C, 30kDa protein.
Length = 346
Score = 49.6 bits (113), Expect = 7e-06
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = -2
Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 293
D+ILI +LR GQE+ L + KG GK+HAK++P A S+ PD
Sbjct: 195 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPD 238
>BC008118-1|AAH08118.1| 338|Homo sapiens POLR1C protein protein.
Length = 338
Score = 49.6 bits (113), Expect = 7e-06
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = -2
Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 293
D+ILI +LR GQE+ L + KG GK+HAK++P A S+ PD
Sbjct: 187 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPD 230
>AL355802-16|CAI42632.1| 200|Homo sapiens RP3-337H4.4 protein.
Length = 200
Score = 49.6 bits (113), Expect = 7e-06
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = -2
Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 293
D+ILI +LR GQE+ L + KG GK+HAK++P A S+ PD
Sbjct: 67 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPD 110
>AL355802-12|CAI42629.1| 346|Homo sapiens RP3-337H4.4 protein.
Length = 346
Score = 49.6 bits (113), Expect = 7e-06
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = -2
Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 293
D+ILI +LR GQE+ L + KG GK+HAK++P A S+ PD
Sbjct: 195 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPD 238
>AL355802-11|CAI42628.1| 314|Homo sapiens RP3-337H4.4 protein.
Length = 314
Score = 49.6 bits (113), Expect = 7e-06
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = -2
Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 293
D+ILI +LR GQE+ L + KG GK+HAK++P A S+ PD
Sbjct: 195 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPD 238
>AF008442-1|AAC14354.1| 346|Homo sapiens RNA polymerase I subunit
hRPA39 protein.
Length = 346
Score = 49.6 bits (113), Expect = 7e-06
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = -2
Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 293
D+ILI +LR GQE+ L + KG GK+HAK++P A S+ PD
Sbjct: 195 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPD 238
>AL355802-15|CAI42633.1| 168|Homo sapiens RP3-337H4.4 protein.
Length = 168
Score = 33.1 bits (72), Expect = 0.61
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -2
Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAK 335
D+ILI +LR GQE+ L + KG GK+ A+
Sbjct: 67 DDILIAQLRPGQEIDLLMHCVKGIGKKVAR 96
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,100,737
Number of Sequences: 237096
Number of extensions: 1408882
Number of successful extensions: 6859
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6857
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -