Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B05f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060644-1|AAL28192.1|  275|Drosophila melanogaster GH07456p pro...   261   4e-70
AJ133650-1|CAB38635.1|  275|Drosophila melanogaster RNA polymera...   261   4e-70
AE014134-2412|AAF53342.1|  275|Drosophila melanogaster CG7885-PA...   261   4e-70
AY119625-1|AAM50279.1|  333|Drosophila melanogaster LP03982p pro...    47   2e-05
AE014134-823|AAF52185.1|  333|Drosophila melanogaster CG3756-PA ...    47   2e-05
AE014134-1672|AAF52796.1| 4345|Drosophila melanogaster CG15828-P...    33   0.23 
AE014134-1671|AAS64667.1| 4374|Drosophila melanogaster CG15828-P...    33   0.23 
AY051429-1|AAK92853.1|  707|Drosophila melanogaster GH10492p pro...    29   3.8  
AE014298-1975|AAF48331.2|  652|Drosophila melanogaster CG32626-P...    29   3.8  
AE014298-1974|AAN09337.1|  707|Drosophila melanogaster CG32626-P...    29   3.8  
AE014298-1973|AAF48330.3|  777|Drosophila melanogaster CG32626-P...    29   3.8  
AE014298-1972|AAF48329.3|  774|Drosophila melanogaster CG32626-P...    29   3.8  
BT011059-1|AAR31130.1|  665|Drosophila melanogaster RE05438p pro...    29   5.1  
AY095052-1|AAM11380.1|  365|Drosophila melanogaster LD40833p pro...    28   8.8  
AF367177-1|AAK31263.1| 1183|Drosophila melanogaster chromatin as...    28   8.8  
AE014298-1215|AAF46399.1| 1183|Drosophila melanogaster CG12109-P...    28   8.8  
AE014296-1686|AAF50247.1|  424|Drosophila melanogaster CG12525-P...    28   8.8  

>AY060644-1|AAL28192.1|  275|Drosophila melanogaster GH07456p
           protein.
          Length = 275

 Score =  261 bits (640), Expect = 4e-70
 Identities = 121/161 (75%), Positives = 138/161 (85%), Gaps = 1/161 (0%)
 Frame = -2

Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEA-DEILIIKLRKGQELKLRAYAKKGFGKEH 341
           VTTADLKSS+ +V+PVTSR++ E+  +YGE+ DEILIIKLRKGQELKLRAYAKKGFGKEH
Sbjct: 115 VTTADLKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEH 174

Query: 340 AKWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNV 161
           AKWNPTAGV FEYDPDN MRHTLYPKPDEWPKSEHTEL +DQYEA +NWEAKPNKFF+NV
Sbjct: 175 AKWNPTAGVCFEYDPDNSMRHTLYPKPDEWPKSEHTELEDDQYEAPYNWEAKPNKFFFNV 234

Query: 160 ESSGALKPENIVLMGIXXXXXXXXXXXXXLAQEAQNDALAI 38
           ES+GALKPENIV+MG+             L+ E+QNDALA+
Sbjct: 235 ESAGALKPENIVVMGVQVLKNKLSNLQTQLSHESQNDALAV 275


>AJ133650-1|CAB38635.1|  275|Drosophila melanogaster RNA polymerase
           II p33 subunit protein.
          Length = 275

 Score =  261 bits (640), Expect = 4e-70
 Identities = 121/161 (75%), Positives = 138/161 (85%), Gaps = 1/161 (0%)
 Frame = -2

Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEA-DEILIIKLRKGQELKLRAYAKKGFGKEH 341
           VTTADLKSS+ +V+PVTSR++ E+  +YGE+ DEILIIKLRKGQELKLRAYAKKGFGKEH
Sbjct: 115 VTTADLKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEH 174

Query: 340 AKWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNV 161
           AKWNPTAGV FEYDPDN MRHTLYPKPDEWPKSEHTEL +DQYEA +NWEAKPNKFF+NV
Sbjct: 175 AKWNPTAGVCFEYDPDNSMRHTLYPKPDEWPKSEHTELEDDQYEAPYNWEAKPNKFFFNV 234

Query: 160 ESSGALKPENIVLMGIXXXXXXXXXXXXXLAQEAQNDALAI 38
           ES+GALKPENIV+MG+             L+ E+QNDALA+
Sbjct: 235 ESAGALKPENIVVMGVQVLKNKLSNLQTQLSHESQNDALAV 275


>AE014134-2412|AAF53342.1|  275|Drosophila melanogaster CG7885-PA,
           isoform A protein.
          Length = 275

 Score =  261 bits (640), Expect = 4e-70
 Identities = 121/161 (75%), Positives = 138/161 (85%), Gaps = 1/161 (0%)
 Frame = -2

Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEA-DEILIIKLRKGQELKLRAYAKKGFGKEH 341
           VTTADLKSS+ +V+PVTSR++ E+  +YGE+ DEILIIKLRKGQELKLRAYAKKGFGKEH
Sbjct: 115 VTTADLKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEH 174

Query: 340 AKWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNV 161
           AKWNPTAGV FEYDPDN MRHTLYPKPDEWPKSEHTEL +DQYEA +NWEAKPNKFF+NV
Sbjct: 175 AKWNPTAGVCFEYDPDNSMRHTLYPKPDEWPKSEHTELEDDQYEAPYNWEAKPNKFFFNV 234

Query: 160 ESSGALKPENIVLMGIXXXXXXXXXXXXXLAQEAQNDALAI 38
           ES+GALKPENIV+MG+             L+ E+QNDALA+
Sbjct: 235 ESAGALKPENIVVMGVQVLKNKLSNLQTQLSHESQNDALAV 275


>AY119625-1|AAM50279.1|  333|Drosophila melanogaster LP03982p
           protein.
          Length = 333

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/43 (48%), Positives = 29/43 (67%)
 Frame = -2

Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 296
           D+ILI +LR G EL LR  A KG G++HAK++P A  ++   P
Sbjct: 188 DDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLP 230


>AE014134-823|AAF52185.1|  333|Drosophila melanogaster CG3756-PA
           protein.
          Length = 333

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/43 (48%), Positives = 29/43 (67%)
 Frame = -2

Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 296
           D+ILI +LR G EL LR  A KG G++HAK++P A  ++   P
Sbjct: 188 DDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLP 230


>AE014134-1672|AAF52796.1| 4345|Drosophila melanogaster CG15828-PA,
            isoform A protein.
          Length = 4345

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 361  KGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSE 239
            K FGK HA W+    + FEY+   +  HTL+     W K+E
Sbjct: 1642 KYFGKVHASWSINEVIEFEYEAGILPGHTLH----NWVKAE 1678


>AE014134-1671|AAS64667.1| 4374|Drosophila melanogaster CG15828-PB,
            isoform B protein.
          Length = 4374

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 361  KGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSE 239
            K FGK HA W+    + FEY+   +  HTL+     W K+E
Sbjct: 1671 KYFGKVHASWSINEVIEFEYEAGILPGHTLH----NWVKAE 1707


>AY051429-1|AAK92853.1|  707|Drosophila melanogaster GH10492p
           protein.
          Length = 707

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 286 MRHTLYPK-PDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGI 113
           +R ++Y K PDEW K     ++ D Y ++  W  +  + F   +S+  +K    +L  I
Sbjct: 377 LRLSIYGKSPDEWYKLAKWAIDNDVYSSNIRWLIQIPRLFDIFKSNKMMKSFQEILNNI 435


>AE014298-1975|AAF48331.2|  652|Drosophila melanogaster CG32626-PB,
           isoform B protein.
          Length = 652

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 286 MRHTLYPK-PDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGI 113
           +R ++Y K PDEW K     ++ D Y ++  W  +  + F   +S+  +K    +L  I
Sbjct: 322 LRLSIYGKSPDEWYKLAKWAIDNDVYSSNIRWLIQIPRLFDIFKSNKMMKSFQEILNNI 380


>AE014298-1974|AAN09337.1|  707|Drosophila melanogaster CG32626-PC,
           isoform C protein.
          Length = 707

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 286 MRHTLYPK-PDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGI 113
           +R ++Y K PDEW K     ++ D Y ++  W  +  + F   +S+  +K    +L  I
Sbjct: 377 LRLSIYGKSPDEWYKLAKWAIDNDVYSSNIRWLIQIPRLFDIFKSNKMMKSFQEILNNI 435


>AE014298-1973|AAF48330.3|  777|Drosophila melanogaster CG32626-PD,
           isoform D protein.
          Length = 777

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 286 MRHTLYPK-PDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGI 113
           +R ++Y K PDEW K     ++ D Y ++  W  +  + F   +S+  +K    +L  I
Sbjct: 447 LRLSIYGKSPDEWYKLAKWAIDNDVYSSNIRWLIQIPRLFDIFKSNKMMKSFQEILNNI 505


>AE014298-1972|AAF48329.3|  774|Drosophila melanogaster CG32626-PA,
           isoform A protein.
          Length = 774

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 286 MRHTLYPK-PDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGI 113
           +R ++Y K PDEW K     ++ D Y ++  W  +  + F   +S+  +K    +L  I
Sbjct: 444 LRLSIYGKSPDEWYKLAKWAIDNDVYSSNIRWLIQIPRLFDIFKSNKMMKSFQEILNNI 502


>BT011059-1|AAR31130.1|  665|Drosophila melanogaster RE05438p
           protein.
          Length = 665

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 286 MRHTLYPK-PDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGI 113
           +R ++Y K PDEW K     ++ D Y ++  W  +  + F   +S   +K    +L  I
Sbjct: 441 LRLSIYGKSPDEWYKLAKWAIDNDVYSSNIRWLIQIPRLFDIFKSDKMMKSFQEILNNI 499


>AY095052-1|AAM11380.1|  365|Drosophila melanogaster LD40833p
           protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = -2

Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKE 344
           + T  +K++D  V  V     DED+AD    D+  +++ +  +E+KL+   KK  GK+
Sbjct: 118 IATKKVKTTDSVVEDVIEL--DEDEADKEIEDQDQLVEAKSSKEVKLK--PKKSEGKK 171


>AF367177-1|AAK31263.1| 1183|Drosophila melanogaster chromatin
           assembly factor-1 p180subunit protein.
          Length = 1183

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = -2

Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKE 344
           + T  +K++D  V  V     DED+AD    D+  +++ +  +E+KL+   KK  GK+
Sbjct: 118 IATKKVKTTDSVVEDVIEL--DEDEADKEIEDQDQLVEAKSSKEVKLK--PKKSEGKK 171


>AE014298-1215|AAF46399.1| 1183|Drosophila melanogaster CG12109-PB
           protein.
          Length = 1183

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = -2

Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKE 344
           + T  +K++D  V  V     DED+AD    D+  +++ +  +E+KL+   KK  GK+
Sbjct: 118 IATKKVKTTDSVVEDVIEL--DEDEADKEIEDQDQLVEAKSSKEVKLK--PKKSEGKK 171


>AE014296-1686|AAF50247.1|  424|Drosophila melanogaster CG12525-PA
           protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -3

Query: 279 IRYIQNQMNGPKASTLNLMKISMRRTSTGKRNQTNSFIM*NHQELLNQKI 130
           IRYI++Q+N  +    N +++ + R++      +   I+   QEL  Q I
Sbjct: 293 IRYIKDQLNFRETIEYNALRMGLNRSNAFSALTSEWMIVAKRQELFKQPI 342


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,605,406
Number of Sequences: 53049
Number of extensions: 442335
Number of successful extensions: 1081
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)