Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15430.1 68415.m01765 DNA-directed RNA polymerase II 36 kDa p...    88   4e-18
At2g15400.1 68415.m01762 DNA-directed RNA polymerase II 36 kDa p...    83   1e-16
At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative i...    52   2e-07
At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative i...    52   2e-07
At1g60620.1 68414.m06824 DNA-directed RNA polymerase, putative i...    50   7e-07
At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative i...    50   1e-06
At1g75310.1 68414.m08748 DNAJ heat shock N-terminal domain-conta...    29   1.9  
At1g65280.1 68414.m07402 DNAJ heat shock N-terminal domain-conta...    27   7.7  

>At2g15430.1 68415.m01765 DNA-directed RNA polymerase II 36 kDa
           polypeptide A / RNA polymerase II subunit 3 (RPB36A)
           identical to SP|Q39211 DNA-directed RNA polymerase II 36
           kDa polypeptide A (EC 2.7.7.6) (RNA polymerase II
           subunit 3) {Arabidopsis thaliana}
          Length = 319

 Score = 87.8 bits (208), Expect = 4e-18
 Identities = 43/82 (52%), Positives = 56/82 (68%)
 Frame = -2

Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
           VT+ DL S+DP V PV     D   +D  E   I+I+KLR+GQELKLRA A+KG GK+HA
Sbjct: 120 VTSRDLYSADPTVTPVDFTI-DSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHA 178

Query: 337 KWNPTAGVSFEYDPDNIMRHTL 272
           KW+P A V+F Y+PD I+   +
Sbjct: 179 KWSPAATVTFMYEPDIIINEDM 200


>At2g15400.1 68415.m01762 DNA-directed RNA polymerase II 36 kDa
           polypeptide B / RNA polymerase II subunit 3 (RPB36B)
           identical to SP|Q39212 DNA-directed RNA polymerase II 36
           kDa polypeptide B (EC 2.7.7.6) (RNA polymerase II
           subunit 3) {Arabidopsis thaliana}
          Length = 319

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 40/82 (48%), Positives = 55/82 (67%)
 Frame = -2

Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
           VT+ DL S+DP V PV     +   +D  E   I+I KLR+GQELKL+A A+KG GK+HA
Sbjct: 120 VTSRDLYSADPTVTPVDFTS-NSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHA 178

Query: 337 KWNPTAGVSFEYDPDNIMRHTL 272
           KW+P A V++ Y+PD I+   +
Sbjct: 179 KWSPAATVTYMYEPDIIINEEM 200


>At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative
           identical to RNA polymerase subunit [Arabidopsis
           thaliana] GI:514322; contains Pfam profile PF01000: RNA
           polymerase Rpb3/RpoA insert domain
          Length = 375

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 22/47 (46%), Positives = 31/47 (65%)
 Frame = -2

Query: 421 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMR 281
           +ILI KL  GQE++L A+A KG GK HAKW+P     +   P+ ++R
Sbjct: 231 DILIAKLAPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLR 277


>At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative
           identical to RNA polymerase subunit [Arabidopsis
           thaliana] GI:514322; contains Pfam profile PF01000: RNA
           polymerase Rpb3/RpoA insert domain
          Length = 375

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 22/47 (46%), Positives = 31/47 (65%)
 Frame = -2

Query: 421 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMR 281
           +ILI KL  GQE++L A+A KG GK HAKW+P     +   P+ ++R
Sbjct: 231 DILIAKLAPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLR 277


>At1g60620.1 68414.m06824 DNA-directed RNA polymerase, putative
           identical to RNA polymerase subunit [Arabidopsis
           thaliana] GI:514324; contains Pfam profile PF01000: RNA
           polymerase Rpb3/RpoA insert domain
          Length = 385

 Score = 50.4 bits (115), Expect = 7e-07
 Identities = 22/46 (47%), Positives = 31/46 (67%)
 Frame = -2

Query: 421 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIM 284
           +ILI KL  GQE++L A+A KG GK HAKW+P A   +   P+ ++
Sbjct: 238 DILIAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVL 283


>At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative
           identical to RNA polymerase subunit [Arabidopsis
           thaliana] GI:514322; contains Pfam profile PF01000: RNA
           polymerase Rpb3/RpoA insert domain
          Length = 302

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 21/43 (48%), Positives = 28/43 (65%)
 Frame = -2

Query: 421 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 293
           +ILI KL  GQE++L A+A KG GK HAKW+P     +   P+
Sbjct: 231 DILIAKLAPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPE 273


>At1g75310.1 68414.m08748 DNAJ heat shock N-terminal
           domain-containing protein low similarity to SP|Q27974
           Auxilin {Bos taurus}; contains Pfam profile PF00226:
           DnaJ domain
          Length = 1448

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -2

Query: 298 PDNIMRHTLYPKPDEWPKSEHTELNEDQYEADF-NWEAKPNKFFYNVESSGALKPENI 128
           P+ +++ T   KP+E  + +   L E+Q      +WE  P   F +V +S   +PEN+
Sbjct: 412 PEGLLKSTSDHKPEELEEQDIITLEEEQARRGRKHWEL-PGGIFKSVMNSKQQEPENL 468


>At1g65280.1 68414.m07402 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 598

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 349 KEHAKWNPTAGVSFEYDPDNIMRHTLYPKP--DEW 251
           +E A+W  + G+S E D + +    + P+P  DEW
Sbjct: 396 QEAAQWRRSQGISMEGDAELLAATEVKPEPKRDEW 430


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,464,927
Number of Sequences: 28952
Number of extensions: 213139
Number of successful extensions: 558
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)