Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B04f
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    27   1.3  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   1.7  
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|...    26   1.7  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    26   1.7  
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe...    25   5.1  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    24   6.8  

>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 76  CASVRVIAVFPTERYYRPQ 132
           C+ +RV +VFP  +Y+ P+
Sbjct: 131 CSQIRVWSVFPAPKYFNPR 149


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 149  VTLFSSYCDINREG*NWCHVLLFI 220
            + LFS Y D+NR   +W H L FI
Sbjct: 1150 IGLFSRYGDLNRINDDWKHSLDFI 1173


>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -3

Query: 340 YPRWSAAEDHRXNRSKGTECSNSNRVDTR 254
           YP WS AED R   +K     NS RVD+R
Sbjct: 120 YPCWSCAEDLRIWMAK---YGNSPRVDSR 145


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -1

Query: 243 HSVMKYFKIN----NKTWHQFQPSRLISQYEENSVTQGVRLLWSVIPLR 109
           +S++K+  IN       W   Q S  + Q EEN V + +R+L SVI LR
Sbjct: 424 YSLVKFLHINPFNDQSVWKD-QISLPLCQGEENLVFKRLRMLLSVIMLR 471


>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 205 MAPVSTFTINITIRREQCDSRRSFIVVCNTAPL 107
           +AP     I++T+ R  CD  ++ I  C   P+
Sbjct: 146 LAPHINVRIHVTLSRSSCDRHQADIFSCFQDPI 178


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 225 FKINNKT-WHQFQPSRLISQYEENSV 151
           FK  ++T W +  P +L   YEENS+
Sbjct: 120 FKGKSRTEWPEGIPPKLFDTYEENSI 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,372,935
Number of Sequences: 5004
Number of extensions: 21128
Number of successful extensions: 40
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)