Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B04f
         (375 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18894| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.53 
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)           28   2.1  
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_5687| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.0  
SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)                      27   6.5  

>SB_18894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
 Frame = -1

Query: 255 DIATH--SVMKYFKINNKTWHQFQPSRLISQYEENSVTQGVRLLWSVIPLRWENCD 94
           D AT+  S++    +N+ T+++F+  RL + Y +N +  G+R   ++  +R+ +CD
Sbjct: 56  DFATYLDSLLSNKYVNSITFYEFE--RLTAVYRKNIIRNGLRSFTNLSEVRFGSCD 109


>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
          Length = 768

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 183 RLISQYEENSVTQG-VRLLWSVIPLRWENCDDAN 85
           R +SQ     VTQ  +RLLW+V  L ++    AN
Sbjct: 295 RAVSQLSSQGVTQANLRLLWAVSQLSYQGVTQAN 328


>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 189 PSRLISQYEENSVTQGVRLLWSVIPLRWENCDDANACALVH*NSLCCS 46
           PSR +S Y      +G+R+ +  + LR   C    AC  VH  S+C S
Sbjct: 197 PSRFLSTYIPGLELEGIRIFFFTVRLRCTVC----ACRYVH--SVCVS 238


>SB_5687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 165 EENSVTQGVRLLWSVIPLRWE 103
           E  SVT GV++L S++  RWE
Sbjct: 33  EVQSVTDGVKILSSILNRRWE 53


>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 880

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 289 TECSNSNRVDTRYCNPFCNEI 227
           T C N N VD   CNP   EI
Sbjct: 269 TPCQNLNFVDGHRCNPITEEI 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,700,309
Number of Sequences: 59808
Number of extensions: 172874
Number of successful extensions: 401
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)