Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B04f
         (375 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.3  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 326 GPPGIHHHH 352
           GPP  HHHH
Sbjct: 348 GPPHHHHHH 356


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -1

Query: 183 RLISQYEENSVTQG---VRLLWSVIPLRWENCD 94
           +LI+  E+N + +    +R +W+   L+W+  D
Sbjct: 62  QLINVNEKNQIMKSNVWLRFIWTDYQLQWDEAD 94


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 63   SSELVRKRSRHRSFPNGAVLQTTINERLES 152
            SSE +    R  S PNG + Q T+  + ++
Sbjct: 1192 SSESILVSWRPPSQPNGVITQYTVYTKADN 1221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,483
Number of Sequences: 438
Number of extensions: 1324
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)