Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B04f
         (375 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02730.1 68418.m00214 allergen V5/Tpx-1-related family protei...    29   1.0  
At2g46640.1 68415.m05818 hypothetical protein  and genefinder; e...    27   5.4  
At5g65440.1 68418.m08230 expressed protein                             26   7.1  
At1g18550.1 68414.m02314 kinesin motor protein-related contains ...    26   7.1  

>At5g02730.1 68418.m00214 allergen V5/Tpx-1-related family protein
           low similarity to SP|Q05968 Pathogenesis-related protein
           1 precursor {Hordeum vulgare}; contains Pfam profile
           PF00188: SCP-like extracellular protein
          Length = 205

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 184 TINITIRREQCDSRRSFIVVCNTAPLG 104
           T  +   R +CD+ R F+V+C  +P G
Sbjct: 159 TTAVGCARSKCDNNRGFLVICEYSPSG 185


>At2g46640.1 68415.m05818 hypothetical protein  and genefinder;
           expression supported by MPSS
          Length = 310

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 138 ERLESHCSLRIVILIVKVETGAMFCYLF*NIS 233
           E LESH  L+I   +  V T  M+C+L  NI+
Sbjct: 249 EALESHYLLKIQECVGIVMTVEMYCFLLTNIT 280


>At5g65440.1 68418.m08230 expressed protein
          Length = 1050

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 63   SSELVRKRSRHRSFPNGAVLQTTINERLESHCSLRIVI 176
            S   V  RS+ RS+    V +   N R++SH  L+ +I
Sbjct: 887  SEVTVLLRSKFRSYMQALVEKLAENTRIQSHMKLKTII 924


>At1g18550.1 68414.m02314 kinesin motor protein-related contains
           similarity to kinesin-related protein GI:4493964 from
           [Plasmodium falciparum]
          Length = 799

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +3

Query: 48  SSTDYSSELVRKRSRHRSFPNGAVLQTTINERLESHCSLRIVILIVKVETGAMFCY 215
           +  DY   L R R RH +F + +  +TT  + + S  +  +V  +++   G++FCY
Sbjct: 189 NENDYL-RLKRLRVRHFTF-DSSFPETTTQQEVYSTTTGDLVEAVLEGRNGSVFCY 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,296,846
Number of Sequences: 28952
Number of extensions: 113595
Number of successful extensions: 256
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)