Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    27   1.7  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    26   3.0  
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    26   3.9  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    26   3.9  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   3.9  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    26   3.9  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    25   6.8  

>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = +1

Query: 97  KEVKKRQQRVLMILDSKNIKYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPNPRSPL 270
           K+ KK+++ + + L  K +  +  + +    + D+D + N  K  G + S  NP++P+
Sbjct: 354 KKEKKKKKVLSISLSGKKVVVDQKEASSESSDEDQDELDNLTKVEGQSHSH-NPKAPV 410


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 286 NDEEYCGDYDQFDLANEVDTLEQFLKL 366
           N E     YD +D  ++VD+LE+ LKL
Sbjct: 455 NQEWLHNFYDAYDALDDVDSLERALKL 481


>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +1

Query: 145 KNIKYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDE 294
           ++++YE I   EP   + K   QN      G   +  P  P   Q+  DE
Sbjct: 133 ESVQYEEIVFNEPFEYTYKLLSQNPIGDGHGLAVESEPDHPFSQQLEQDE 182


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 154 KYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPN 255
           KY+  D  E GR   K+ +++ A S   ++ DPN
Sbjct: 522 KYKAEDEAESGRIQAKNHLESYAYSLRNSLDDPN 555


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 178 EPGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEE 297
           E G  +  +  +N+ +    TVS  +P   LPP   N+ E
Sbjct: 442 EQGNSNAPELNKNDYEGEEITVSQKSPSPSLPPNELNEPE 481


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 217 NAKSSGGTVSDPNPRSPLPPQMFNDEEY 300
           NAK S G +       PLPPQ FN  +Y
Sbjct: 394 NAKQSSGKLG------PLPPQSFNSSDY 415


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 187 RESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEE 297
           RES+     NNA++S  T+ + +P       +FNDEE
Sbjct: 393 RESEATLGVNNAQTSRSTIPEEDP-------LFNDEE 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.135    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,625,715
Number of Sequences: 5004
Number of extensions: 30269
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)