Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27025.1 68416.m03381 expressed protein                             29   1.9  
At5g38410.1 68418.m04643 ribulose bisphosphate carboxylase small...    29   2.5  
At1g53165.1 68414.m06023 protein kinase, putative similar to ser...    28   3.3  
At1g06030.1 68414.m00631 pfkB-type carbohydrate kinase family pr...    28   3.3  
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR...    28   4.4  
At1g06020.1 68414.m00630 pfkB-type carbohydrate kinase family pr...    28   4.4  
At2g13450.1 68415.m01484 hypothetical protein similar to zinc fi...    27   7.7  
At1g15660.1 68414.m01880 expressed protein similar to CENPCA pro...    27   7.7  

>At3g27025.1 68416.m03381 expressed protein 
          Length = 299

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 193 SDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCG 306
           SD   ++ N+ S  G   DPNP        F+++E+CG
Sbjct: 44  SDVQDIRTNSFSFYGHTHDPNPSKVEQDLRFDEDEFCG 81


>At5g38410.1 68418.m04643 ribulose bisphosphate carboxylase small
           chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)
           identical to SP|P10798 Ribulose bisphosphate carboxylase
           small chain 3B, chloroplast precursor (EC 4.1.1.39)
           (RuBisCO small subunit 3B) {Arabidopsis thaliana}
          Length = 181

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 187 RESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQFDLANEVDTL 348
           R+++KD    +  S+GG VS      P+  + F    Y  D    +LA EVD L
Sbjct: 37  RKTNKDI--TSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYL 88


>At1g53165.1 68414.m06023 protein kinase, putative similar to
           serine/threonine protein kinase 24 [Homo sapiens]
           SWISS-PROT:Q9Y6E0
          Length = 1007

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
 Frame = +1

Query: 157 YEVIDITEPG---RES-DKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGD-YDQF 321
           + V +I+E G   R+S   D+ + +  S  GTV   +PRS     MF D+      Y  F
Sbjct: 711 FGVPEISEGGFNKRDSYQNDYQEEDDSSGSGTVVIRSPRSSQSSSMFRDQSSGSTRYTSF 770

Query: 322 DLANEVDTL 348
           D A+   T+
Sbjct: 771 DDASTSGTV 779


>At1g06030.1 68414.m00631 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 329

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +1

Query: 130 MILDSKNIKYEVID-ITEPGRESDKDFMQNNAKSSGGTVS-DPNPRSPL-PPQMFNDEEY 300
           +I  +K   Y  I  ITEP R +    M+  AK +G  +S DPN R PL P      ++ 
Sbjct: 132 LIRSAKVFHYGSISLITEPCRSAHMKAMEV-AKEAGALLSYDPNLREPLWPSPEEARKQI 190

Query: 301 CGDYDQFDLANEVDTLEQFL 360
              +D+ D+    D   +FL
Sbjct: 191 MSIWDKADIIKVSDVELEFL 210


>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1234

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +1

Query: 196  DKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEY---CGDYDQFDLANEVDTLEQF 357
            D ++  +  K  G  +S+ +  S     + ++ +Y   C D D  DL NE+D  E +
Sbjct: 1090 DDNYNHHKIKGCGIRLSEDDESSDDDDDLSSETDYSDECEDSDDSDLGNEIDYSEDY 1146


>At1g06020.1 68414.m00630 pfkB-type carbohydrate kinase family
           protein similar to fructokinase GI:2102693 from
           [Lycopersicon esculentum]
          Length = 345

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +1

Query: 130 MILDSKNIKYEVID-ITEPGRESDKDFMQNNAKSSGGTVS-DPNPRSPLPPQMFNDE-EY 300
           +I  +K   Y  I  ITEP R +    M+  AK +G  +S DPN R PL P       + 
Sbjct: 131 LIRSAKVFHYGSISLITEPCRSAHMKAMEV-AKEAGALLSYDPNLREPLWPSPEEARTQI 189

Query: 301 CGDYDQFDLANEVDTLEQFL 360
              +D+ D+    D   +FL
Sbjct: 190 MSIWDKADIIKVSDVELEFL 209


>At2g13450.1 68415.m01484 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 394

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +1

Query: 121 RVLMILDSKNIKYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEY 300
           RV      +N++ EV  + +    S  +     ++SS  T  DP PR P PP   N +E 
Sbjct: 228 RVTNTTAQRNVREEVF-MRDENLRSSMNSQSQMSESSFPTPIDPPPRIPHPP--LNPDEL 284

Query: 301 CGDY 312
              Y
Sbjct: 285 VAAY 288


>At1g15660.1 68414.m01880 expressed protein similar to CENPCA
           protein (GI:11863170) {Zea mays}
          Length = 705

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +1

Query: 109 KRQQRVLMILDSKNIKYEVIDITEPGRESDKDFMQNNAKSSGG--TVSDPNPRSPL--PP 276
           + Q++   IL+  ++  ++  I  P +   +  +    KS     T S P P +P   P 
Sbjct: 63  EHQEQAKAILEDVDVDVQLNPI--PNKRERRPGLDRKRKSFSLHLTTSQPPPVAPSFDPS 120

Query: 277 QMFNDEEYCGDYDQFDLAN 333
           +    E++   YD+F+LAN
Sbjct: 121 KYPRSEDFFAAYDKFELAN 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.135    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,496,073
Number of Sequences: 28952
Number of extensions: 158634
Number of successful extensions: 393
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)