Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_35872| Best HMM Match : NTR (HMM E-Value=3.6e-06)                   27   9.4  

>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = -3

Query: 402 CSNLPLHCKFIANNGTKQ*A*AFV------EVTSWLYLGLMHIIKLYH 277
           C NL LHC  I     KQ   AF+       ++     G++HI  LYH
Sbjct: 311 CVNLRLHCNLIKGVLDKQGYSAFLIASFPNNISQSTSAGIVHIFSLYH 358


>SB_35872| Best HMM Match : NTR (HMM E-Value=3.6e-06)
          Length = 598

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 333 VEVTSWLYLGLMHIIKLYHISVILILRLAFQVNSSIDLWHYH 208
           V++T   +    H+ + YH SV  + +L   +N  + LW Y+
Sbjct: 493 VKITGRDHNATSHVTQ-YHASVKFVFKLRMPINLKLHLWVYN 533


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,892,073
Number of Sequences: 59808
Number of extensions: 255328
Number of successful extensions: 443
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)