Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310A12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    27   1.7  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   2.2  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    26   3.0  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   6.8  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    25   6.8  
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    25   6.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.0  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   9.0  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    25   9.0  

>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 340 MFKTGTNLRLMVQLKMEVKKRRNQKTTPLITEGR 441
           + +T  N+RL+ +L+  +KK+ N  T P    G+
Sbjct: 39  LLETDVNVRLVQELRSNIKKKINVSTLPQGINGK 72


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 399 LFYFHLQLHHQS*VRSSLEHLQR*TA 322
           +FY H   H+ S VR++  H+QR TA
Sbjct: 141 IFYVHGGAHYLSTVRTNAYHIQRHTA 166


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 161 QHAYGNHQWRQRHLLHHGATQRLHRC 238
           ++  G H W +R  L+HG + +++ C
Sbjct: 360 EYCGGAHIWLKREDLNHGGSHKINNC 385


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 480 KFQEHFRKCFLPSSSFCNKRRCFLVSSLFYFHLQLH 373
           + Q H R+  +PS S C ++  F  ++    H+ LH
Sbjct: 193 QLQNHIREAHVPSCSICGRQ--FKTAAHLRHHVVLH 226


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 168 LMGITNGVSAIFSIMAP 218
           L+GIT GVS I  I AP
Sbjct: 318 LLGITTGVSGILGIPAP 334


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 125 HVVTHRLIPEPCQHAYGNHQWRQRHLLHH 211
           + +THR  PE   + +GN   +Q + + H
Sbjct: 94  YAITHRFDPESSTYGHGNRTNQQNNSILH 122


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 504 IFTTSLQGKFQEHFRKCFLPSSSFCNKRRCFL 409
           IF  +L    Q+H+ + +    +FC KRR ++
Sbjct: 329 IFQKTLHDIQQKHYARSWPAIKAFCEKRRNYI 360


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 339 DVQDWNEPKTDGAIEDGSKKEKKPENNAAYYRRKSLGENI 458
           DV + + P TD      +  +KK + N    ++KS  +NI
Sbjct: 195 DVPEVSRPSTDTIGVSSALSKKKKKRNRKNQKKKSTKQNI 234


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 503 YLRLAYKVNFKSILENVFSQALPSVISGVVFWFL 402
           +++  + VNF + L  + +QA   ++SGV  WF+
Sbjct: 62  FVKEGFMVNFAT-LTGIVAQADQRLLSGVKSWFI 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,347
Number of Sequences: 5004
Number of extensions: 36080
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)