Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310A12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0557 + 4394754-4396040                                           36   0.020
12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106           36   0.026
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133...    31   0.42 
09_06_0242 - 21806370-21806483,21806574-21806660,21806865-218069...    31   0.74 
05_03_0118 - 8586731-8587220,8587331-8587846,8588842-8588906,858...    28   5.2  
01_03_0286 - 14657682-14657803,14658194-14658419,14659894-146598...    27   6.9  
10_08_0497 - 18336819-18337140,18337226-18337360,18337579-183376...    27   9.1  

>11_01_0557 + 4394754-4396040
          Length = 428

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
 Frame = +3

Query: 120 GFMLSHIDLSPNHASTLMGITNGVSAIFSIM-APLSVSIVVT------DQTEASEWRKVF 278
           GF ++H+D++P  A  +MGI+N    +  I+   L+  I+        D T +  WR VF
Sbjct: 344 GFAVNHMDVAPKFAGIVMGISNTAGTLAGIVGVGLTGRILEAAKASNMDLTSSESWRTVF 403

Query: 279 FI 284
           F+
Sbjct: 404 FV 405


>12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106
          Length = 427

 Score = 35.5 bits (78), Expect = 0.026
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
 Frame = +3

Query: 120 GFMLSHIDLSPNHASTLMGITNGVSAIFSIM-APLSVSIVV------TDQTEASEWRKVF 278
           GF ++H+D++P  A  +MG++N    +  I+   L+ SI+        D T +  W+ VF
Sbjct: 343 GFAVNHMDVAPKFAGIVMGVSNTAGTLAGIVGVGLTGSILEGAKASNMDLTNSETWKTVF 402

Query: 279 FI 284
           F+
Sbjct: 403 FV 404


>05_05_0059 +
           22011168-22011662,22012668-22012894,22013029-22013377,
           22013464-22013508,22013589-22013735,22013851-22013988,
           22014126-22014159,22014258-22014430
          Length = 535

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 18/76 (23%), Positives = 34/76 (44%)
 Frame = +3

Query: 12  GPAVALLGLSYLPAGNXXXXXXXXXXXXXXNGAHYVGFMLSHIDLSPNHASTLMGITNGV 191
           GP V+LL L +  A                +     G+  +  D++P +A +L G+TNG+
Sbjct: 427 GPGVSLLCLRF--AQTPSVAAVLMTIALSLSSFSQAGYFCNVQDIAPKYAGSLHGLTNGI 484

Query: 192 SAIFSIMAPLSVSIVV 239
             + +I++ +     V
Sbjct: 485 GTVAAIVSTIGTGYFV 500


>09_06_0242 -
           21806370-21806483,21806574-21806660,21806865-21806917,
           21806999-21807140,21807406-21807501,21808617-21808785,
           21808859-21808939,21809032-21809106,21810322-21810387,
           21811013-21811158,21811898-21812344
          Length = 491

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 120 GFMLSHIDLSPNHASTLMGITNGVSAIFSIM 212
           G   +H D+S  +AS L+GITN V A+  I+
Sbjct: 408 GLYCTHQDISREYASILLGITNTVGAVPGIV 438


>05_03_0118 -
           8586731-8587220,8587331-8587846,8588842-8588906,
           8589483-8589989
          Length = 525

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 2   RALGARGRSARPLVSSSRKFNPGGHH 79
           R  GARGR   P      +F P GHH
Sbjct: 287 RGGGARGRGLGPRAHFDGRFEPHGHH 312


>01_03_0286 -
           14657682-14657803,14658194-14658419,14659894-14659899,
           14661218-14661298,14662498-14662888,14663207-14663352,
           14665455-14665562
          Length = 359

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
 Frame = +2

Query: 116 CWFHVVTHRLIPEPCQHAYGNH-----QWRQRHLLHHG 214
           C  H   H +   P  HA G H     Q+R+ ++LHHG
Sbjct: 243 CKNHRWVHDIKRAPSNHAIGEHFRSGMQFRKYYVLHHG 280


>10_08_0497 -
           18336819-18337140,18337226-18337360,18337579-18337673,
           18337759-18337845,18337923-18338129,18338209-18338535,
           18338711-18338803,18338861-18339175,18339283-18339792,
           18339889-18339960,18341209-18341256,18341427-18341551,
           18341640-18341661
          Length = 785

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 223 LSGAMMEK-MALTPLVIPISVLAWFGDKSMCDNMKPT 116
           L GA+ E+   LT  V+PIS      DK   +++KPT
Sbjct: 354 LRGALTERGPKLTSFVVPISFCKTSKDKKQKESIKPT 390


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,353,684
Number of Sequences: 37544
Number of extensions: 259816
Number of successful extensions: 806
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)