Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310A12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32244| Best HMM Match : DUF1301 (HMM E-Value=5.1)                   56   1e-08
SB_24826| Best HMM Match : MFS_1 (HMM E-Value=1.1e-26)                 56   1e-08
SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)            54   7e-08
SB_32467| Best HMM Match : MFS_1 (HMM E-Value=0.41)                    52   2e-07
SB_58676| Best HMM Match : FUN14 (HMM E-Value=0.16)                    44   8e-05
SB_29703| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.002
SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.002
SB_43990| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.027
SB_29126| Best HMM Match : FUN14 (HMM E-Value=1.8)                     35   0.047
SB_15046| Best HMM Match : IlvB_leader (HMM E-Value=4.4)               34   0.082
SB_20577| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.11 
SB_12292| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_12853| Best HMM Match : RhoGAP (HMM E-Value=9.5e-13)                32   0.25 
SB_40992| Best HMM Match : DUF1531 (HMM E-Value=5.7)                   32   0.25 
SB_36475| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_6008| Best HMM Match : CPSase_L_D2 (HMM E-Value=0)                  29   1.8  
SB_43174| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_46809| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_39265| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_32068| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_18405| Best HMM Match : C1_1 (HMM E-Value=8.2)                      27   9.4  

>SB_32244| Best HMM Match : DUF1301 (HMM E-Value=5.1)
          Length = 149

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 25/88 (28%), Positives = 47/88 (53%)
 Frame = +3

Query: 102 NGAHYVGFMLSHIDLSPNHASTLMGITNGVSAIFSIMAPLSVSIVVTDQTEASEWRKVFF 281
           +G  Y GF ++ +D++P ++S +MG+ N +      + P+ V  +  ++T A EWR VF+
Sbjct: 31  SGLIYPGFQVNMLDIAPRNSSIIMGLCNTIGGTTGFITPMMVGFMTRNKT-AEEWRLVFW 89

Query: 282 ISIAXXXXXXXXXXXXISGDVQDWNEPK 365
            ++             +S D Q W++PK
Sbjct: 90  TTLLVYIIGATVFCLLVSVDRQQWDKPK 117


>SB_24826| Best HMM Match : MFS_1 (HMM E-Value=1.1e-26)
          Length = 473

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 25/88 (28%), Positives = 47/88 (53%)
 Frame = +3

Query: 102 NGAHYVGFMLSHIDLSPNHASTLMGITNGVSAIFSIMAPLSVSIVVTDQTEASEWRKVFF 281
           +G  Y GF ++ +D++P ++S +MG+ N +      + P+ V  +  ++T A EWR VF+
Sbjct: 355 SGLIYPGFQVNMLDIAPRNSSIIMGLCNTIGGTTGFITPMMVGFMTRNKT-AEEWRLVFW 413

Query: 282 ISIAXXXXXXXXXXXXISGDVQDWNEPK 365
            ++             +S D Q W++PK
Sbjct: 414 TTLLVYIIGATVFCLLVSVDRQQWDKPK 441


>SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)
          Length = 676

 Score = 54.0 bits (124), Expect = 7e-08
 Identities = 26/84 (30%), Positives = 46/84 (54%)
 Frame = +3

Query: 102 NGAHYVGFMLSHIDLSPNHASTLMGITNGVSAIFSIMAPLSVSIVVTDQTEASEWRKVFF 281
           +G  + G+ ++ +D++P +A  +MG+ N +      ++PL V IV  ++ EA EWR VF+
Sbjct: 555 SGLLHSGYNVNMLDIAPPYACIIMGLCNTLGTTAGFLSPLLVGIVTVNK-EAREWRTVFW 613

Query: 282 ISIAXXXXXXXXXXXXISGDVQDW 353
           I+              +SGD+Q W
Sbjct: 614 ITFFVYLVGAIVFCTFMSGDLQPW 637


>SB_32467| Best HMM Match : MFS_1 (HMM E-Value=0.41)
          Length = 366

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 29/83 (34%), Positives = 42/83 (50%)
 Frame = +3

Query: 105 GAHYVGFMLSHIDLSPNHASTLMGITNGVSAIFSIMAPLSVSIVVTDQTEASEWRKVFFI 284
           G  + GF ++H+D++P  A  L+GI+N V+ I  I +PL     +T    A EWR VF+I
Sbjct: 266 GLAFSGFFVNHLDIAPQFAGILLGISNTVATIPGIFSPL-----LTGYIAAVEWRIVFYI 320

Query: 285 SIAXXXXXXXXXXXXISGDVQDW 353
             A             SG+ Q W
Sbjct: 321 GGAIYAAGAVFYAVFASGEKQTW 343


>SB_58676| Best HMM Match : FUN14 (HMM E-Value=0.16)
          Length = 217

 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 19/57 (33%), Positives = 33/57 (57%)
 Frame = +3

Query: 114 YVGFMLSHIDLSPNHASTLMGITNGVSAIFSIMAPLSVSIVVTDQTEASEWRKVFFI 284
           Y G+ ++ +D++P  A  +MGI N V      ++P+ V   +T    A+EWR VF++
Sbjct: 35  YAGYTVNMLDIAPRCAGVIMGICNTVGTTAGFISPMLVGF-LTQHKSAAEWRIVFWV 90


>SB_29703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +3

Query: 105 GAHYVGFMLSHIDLSPNHASTLMGITNGVSAIFSIMAP 218
           G +  GF ++H+D++P +A  LMGITN    +  I AP
Sbjct: 91  GFNLSGFNVNHLDIAPRYAGILMGITNSFGTVPGIAAP 128


>SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +3

Query: 105 GAHYVGFMLSHIDLSPNHASTLMGITNGVSAIFSIMAP 218
           G +  GF ++H+D++P +A  LMGITN    +  I AP
Sbjct: 130 GFNLSGFNVNHLDIAPRYAGILMGITNSFGTVPGIAAP 167


>SB_43990| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 114 YVGFMLSHIDLSPNHASTLMGITNGVSAIFSIMAPLSVSIVVTDQ 248
           YVG  ++  D++P ++  +MG+ N +     IM PL V ++V  +
Sbjct: 59  YVGAGVNPFDIAPRYSGIIMGMANTLKTFNGIMGPLVVGLIVKSE 103


>SB_29126| Best HMM Match : FUN14 (HMM E-Value=1.8)
          Length = 204

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 14/51 (27%), Positives = 30/51 (58%)
 Frame = +3

Query: 102 NGAHYVGFMLSHIDLSPNHASTLMGITNGVSAIFSIMAPLSVSIVVTDQTE 254
           +G  + G+ ++ +D++P +A  +MG+ N +      ++PL V IV  ++ E
Sbjct: 32  SGLLHSGYNVNMLDIAPPYACIIMGLCNTLGTTAGFLSPLLVGIVTVNKIE 82


>SB_15046| Best HMM Match : IlvB_leader (HMM E-Value=4.4)
          Length = 123

 Score = 33.9 bits (74), Expect = 0.082
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = +3

Query: 105 GAHYVGFMLSHIDLSPNHASTLMGITNGVSAIFSIMAPLSVSIVVTDQ 248
           G +  G+ ++ +D++P +A  +MG+TN   A    ++P  V I+  ++
Sbjct: 76  GINAAGYAVNILDIAPKYAGVIMGVTNVFGAAPGFISPQIVGIITPNK 123


>SB_20577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +3

Query: 120 GFMLSHIDLSPNHASTLMGITNGVSAIFSIMAPLSVSIVVTDQ 248
           G  ++  D++P ++  +MG+ N ++    IMAPL V ++V  +
Sbjct: 35  GVGVNAFDIAPRYSGIIMGMANTLATFNGIMAPLVVGLIVKSE 77


>SB_12292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 23/88 (26%), Positives = 40/88 (45%)
 Frame = +3

Query: 171 MGITNGVSAIFSIMAPLSVSIVVTDQTEASEWRKVFFISIAXXXXXXXXXXXXISGDVQD 350
           MG+TN  ++    ++P  ++ +VT   +  EWR VF+I++              SG  Q 
Sbjct: 1   MGLTNTFASTPGFISP-QITGIVTKHKKQEEWRIVFWITMIVYVVAVIGYSALCSGYRQP 59

Query: 351 WNEPKTDGAIEDGSKKEKKPENNAAYYR 434
           W   +    +   S+KE+  EN    +R
Sbjct: 60  WAGGRDQVEL---SEKERDEENGKKGHR 84


>SB_12853| Best HMM Match : RhoGAP (HMM E-Value=9.5e-13)
          Length = 687

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 158 CQHAYGNHQWRQRHLLHH 211
           C H Y +H++R RH LHH
Sbjct: 371 CHHLYSHHRYRHRHHLHH 388


>SB_40992| Best HMM Match : DUF1531 (HMM E-Value=5.7)
          Length = 104

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 255 ASEWRKVFFISIAXXXXXXXXXXXXISGDVQDW--NEPKTDGAIEDGSKKEK 404
           A EWR VF+I+              +SGD Q W  ++P  +   E G KK++
Sbjct: 2   AKEWRVVFWITFIVYIVGIVLFGLLVSGDKQKWAMDDPSGEKDEEKGEKKKQ 53


>SB_36475| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 120 GFMLSHIDLSPNHASTLMGITNGVSAIFSIMAPLSVSIVVTDQ 248
           G  ++  D++P ++  +MG+ N ++    IMAP  V ++V  +
Sbjct: 214 GVGVNAFDIAPRYSGIIMGMANTLATFNGIMAPPVVGLIVKSE 256


>SB_6008| Best HMM Match : CPSase_L_D2 (HMM E-Value=0)
          Length = 866

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -1

Query: 284 DEENLPPFRCFGLIS--YNDGDAEWR-HDGEDGADAIGD 177
           D++N   F  +G  +  YNDGD E+  H G+D  D  GD
Sbjct: 719 DDDNDGEFDGYGNDNNDYNDGDGEYNYHGGDDDGDGDGD 757


>SB_43174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 120 GFMLSHIDLSPNHASTLMGITNGVSAIFSIMAPLSVSIVVTDQ 248
           G  ++ +D++   +  +MG+ N  S    IMAP+   ++V  Q
Sbjct: 257 GVGVNALDIATRLSCAIMGMANTFSTFNGIMAPIVAGLIVRSQ 299


>SB_46809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -1

Query: 512 LHKYLRLAYKVNFKSIL-ENVFSQALPSVISGVVFWFLLFFTSIFNCTISL 363
           LH+   L   +NF + L   +FS  L  ++  + F F+ +FTS++NC  +L
Sbjct: 7   LHQKPDLERALNFLNFLFAAIFS--LEFILKVIGFGFVSYFTSVWNCLDAL 55


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 363  KTDGAIEDGSKKEKKPE 413
            K D  IEDG  +EKKPE
Sbjct: 3232 KADSVIEDGGVQEKKPE 3248


>SB_39265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 447 PSSSFCNKRRCFLVSSLFY 391
           PS     KRRCFL  SLF+
Sbjct: 15  PSGKATGKRRCFLAFSLFF 33


>SB_32068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 447 PSSSFCNKRRCFLVSSLFY 391
           PS     KRRCFL  SLF+
Sbjct: 15  PSGKATGKRRCFLAFSLFF 33


>SB_18405| Best HMM Match : C1_1 (HMM E-Value=8.2)
          Length = 133

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 474 QEHFRKCFLPSSSFCNKRRCFLVSSLFYFHLQL 376
           +EH ++   PS+  C KR C   + +  F L +
Sbjct: 64  EEHLKEKITPSAKNCQKRLCLHFAKILQFALSI 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,968,535
Number of Sequences: 59808
Number of extensions: 286259
Number of successful extensions: 1697
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1665
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)