Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310A12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.7  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +2

Query: 158 CQHAYGNHQWRQRHLLHHGAT-QRLHRCN 241
           CQ A+      Q HL  HG   +  +RCN
Sbjct: 67  CQKAFDQKNLYQSHLRSHGKEGEDPYRCN 95


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 435 FCNKRRCFLVSSLFYFHLQLHHQS*VRSSLEHLQR*TANR 316
           FC  RR  L       HL+ H    +  +++  Q  T NR
Sbjct: 226 FCAARRIVLEERRAQSHLEAHCYFDIEPTVQQHQPVTVNR 265


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 103 TVLIMLVSCCHTSTYP 150
           T ++ + +CC   TYP
Sbjct: 225 TKVLKMYACCPNDTYP 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,211
Number of Sequences: 438
Number of extensions: 2681
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)