Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310A12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44370.1 68418.m05433 transporter-related similar to vesicula...    39   0.002
At5g20380.1 68418.m02424 transporter-related low similarity to v...    36   0.022
At5g53040.1 68418.m06588 RWP-RK domain-containing protein contai...    31   0.47 
At3g53640.1 68416.m05925 protein kinase family protein contains ...    29   1.4  
At2g37035.1 68415.m04543 expressed protein                             29   1.4  
At4g30320.1 68417.m04310 allergen V5/Tpx-1-related family protei...    28   4.4  
At5g14440.1 68418.m01690 surfeit locus 2 protein-related / SURF2...    27   5.8  
At2g46830.2 68415.m05844 myb-related transcription factor (CCA1)...    27   7.7  
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)...    27   7.7  

>At5g44370.1 68418.m05433 transporter-related similar to vesicular
           glutamate transporter 2 [Mus musculus] GI:15811369,
           Na-dependent inorganic phosphate cotransporter [Homo
           sapiens] GI:7328923; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 432

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
 Frame = +3

Query: 120 GFMLSHIDLSPNHASTLMGITNGVSAIFSIMAP------LSVS-IVVTDQTEASEWRKVF 278
           GF ++H+D++P +A  +MG++N    +  I+        L  S +V +D +    WR VF
Sbjct: 348 GFAVNHMDIAPRYAGIVMGVSNTAGTLAGIIGVDLTGKLLEASKLVYSDLSHPESWRVVF 407

Query: 279 FI 284
           FI
Sbjct: 408 FI 409


>At5g20380.1 68418.m02424 transporter-related low similarity to
           vesicular glutamate transporter 3 [Rattus norvegicus]
           GI:21685382
          Length = 517

 Score = 35.5 bits (78), Expect = 0.022
 Identities = 19/55 (34%), Positives = 32/55 (58%)
 Frame = +3

Query: 120 GFMLSHIDLSPNHASTLMGITNGVSAIFSIMAPLSVSIVVTDQTEASEWRKVFFI 284
           G   +H D+SP +AS L+GITN V A+  I+  ++++  + D T +  W    F+
Sbjct: 437 GLYCTHQDISPEYASILLGITNTVGAVPGIVG-VALTGFLLDSTHS--WTMSLFV 488


>At5g53040.1 68418.m06588 RWP-RK domain-containing protein contains
           Pfam profile: PF02042 RWP-RK domain
          Length = 256

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 357 EPKTDGAIEDGSKKEKKPENNAAYYRRKSLGENIF 461
           E + D  + DG+KK ++    A Y RRKSLG++ +
Sbjct: 222 EQEPDAELSDGTKKLRQACFKANYKRRKSLGDDYY 256


>At3g53640.1 68416.m05925 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 642

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 242 SYNDGDAEWRHDGEDGADAIGDSHKRAGMVRG*VD 138
           S  DG  E RHD ED  D++  SHK  G  +G V+
Sbjct: 135 SGGDGYGEVRHDAEDDLDSL-KSHKPNGETQGNVE 168


>At2g37035.1 68415.m04543 expressed protein
          Length = 433

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 440 LPSVISGVVFWFLLFFTSIFNCTISLRFVPVLN 342
           L S +S    W +L FT++++  +++ FV V+N
Sbjct: 228 LVSFLSAAYGWVILGFTTVYSLVLAIMFVTVIN 260


>At4g30320.1 68417.m04310 allergen V5/Tpx-1-related family protein
           similar to SP|Q40374 Pathogenesis-related protein PR-1
           precursor {Medicago truncatula}; contains Pfam profile
           PF00188: SCP-like extracellular protein
          Length = 161

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +1

Query: 100 LTVLIMLVSCCHTSTY 147
           +T +++LV+CCH +TY
Sbjct: 11  ITAMMLLVTCCHCATY 26


>At5g14440.1 68418.m01690 surfeit locus 2 protein-related / SURF2
           protein-related contains weak hit to Pfam profile
           PF05477: Surfeit locus protein 2 (SURF2)
          Length = 291

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 360 PKTDGAIEDGSKKEKKPENNAAYYRRKSL 446
           P  +  +ED  KK+KK +NN     +KS+
Sbjct: 132 PAKENGVEDEDKKKKKKKNNKKKKNKKSV 160


>At2g46830.2 68415.m05844 myb-related transcription factor (CCA1)
           identical to myb-related transcription factor (CCA1)
           GI:4090569 from [Arabidopsis thaliana]
          Length = 526

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +3

Query: 330 ISGDVQDWNEPKTDGAIEDGSKKEKKPENNAAYYRRKSLGENI 458
           +  D  +  E  T+G +++ ++   KP+ + +  RR  +  NI
Sbjct: 354 VEADASERQEDGTNGEVKETNEDTNKPQTSESNARRSRISSNI 396


>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
           identical to myb-related transcription factor (CCA1)
           GI:4090569 from [Arabidopsis thaliana]
          Length = 608

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +3

Query: 330 ISGDVQDWNEPKTDGAIEDGSKKEKKPENNAAYYRRKSLGENI 458
           +  D  +  E  T+G +++ ++   KP+ + +  RR  +  NI
Sbjct: 436 VEADASERQEDGTNGEVKETNEDTNKPQTSESNARRSRISSNI 478


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,537,486
Number of Sequences: 28952
Number of extensions: 200345
Number of successful extensions: 564
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)