Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310A10f
(500 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.043
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.043
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 35 0.043
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.043
SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37) 35 0.043
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4) 35 0.043
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.043
SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.043
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.043
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40) 35 0.043
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.043
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.043
SB_10526| Best HMM Match : CUE (HMM E-Value=6.5) 35 0.043
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.043
SB_4159| Best HMM Match : Vpu (HMM E-Value=2) 35 0.043
SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8) 33 0.10
SB_51122| Best HMM Match : UCR_TM (HMM E-Value=5.5) 31 0.53
SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6) 31 0.71
SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05) 29 1.6
SB_28728| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31) 28 3.8
SB_55456| Best HMM Match : Cadherin (HMM E-Value=0) 28 3.8
SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 27 6.6
SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3) 27 6.6
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 34.7 bits (76), Expect = 0.043
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1
Query: 500 PVNCNTTHYRAXW 462
PVNCNTTHYRA W
Sbjct: 12 PVNCNTTHYRANW 24
>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 34.7 bits (76), Expect = 0.043
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1
Query: 500 PVNCNTTHYRAXW 462
PVNCNTTHYRA W
Sbjct: 68 PVNCNTTHYRANW 80
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 34.7 bits (76), Expect = 0.043
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1
Query: 500 PVNCNTTHYRAXW 462
PVNCNTTHYRA W
Sbjct: 636 PVNCNTTHYRANW 648
>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 34.7 bits (76), Expect = 0.043
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1
Query: 500 PVNCNTTHYRAXW 462
PVNCNTTHYRA W
Sbjct: 47 PVNCNTTHYRANW 59
>SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)
Length = 257
Score = 34.7 bits (76), Expect = 0.043
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1
Query: 500 PVNCNTTHYRAXW 462
PVNCNTTHYRA W
Sbjct: 9 PVNCNTTHYRANW 21
>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
Length = 117
Score = 34.7 bits (76), Expect = 0.043
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1
Query: 500 PVNCNTTHYRAXW 462
PVNCNTTHYRA W
Sbjct: 49 PVNCNTTHYRANW 61
>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1907
Score = 34.7 bits (76), Expect = 0.043
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1
Query: 500 PVNCNTTHYRAXW 462
PVNCNTTHYRA W
Sbjct: 1887 PVNCNTTHYRANW 1899
>SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 34.7 bits (76), Expect = 0.043
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1
Query: 500 PVNCNTTHYRAXW 462
PVNCNTTHYRA W
Sbjct: 47 PVNCNTTHYRANW 59
>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 34.7 bits (76), Expect = 0.043
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1
Query: 500 PVNCNTTHYRAXW 462
PVNCNTTHYRA W
Sbjct: 9 PVNCNTTHYRANW 21
>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
Length = 768
Score = 34.7 bits (76), Expect = 0.043
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1
Query: 500 PVNCNTTHYRAXW 462
PVNCNTTHYRA W
Sbjct: 41 PVNCNTTHYRANW 53
>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 34.7 bits (76), Expect = 0.043
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1
Query: 500 PVNCNTTHYRAXW 462
PVNCNTTHYRA W
Sbjct: 90 PVNCNTTHYRANW 102
>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 34.7 bits (76), Expect = 0.043
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1
Query: 500 PVNCNTTHYRAXW 462
PVNCNTTHYRA W
Sbjct: 68 PVNCNTTHYRANW 80
>SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)
Length = 281
Score = 34.7 bits (76), Expect = 0.043
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1
Query: 500 PVNCNTTHYRAXW 462
PVNCNTTHYRA W
Sbjct: 79 PVNCNTTHYRANW 91
>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 34.7 bits (76), Expect = 0.043
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1
Query: 500 PVNCNTTHYRAXW 462
PVNCNTTHYRA W
Sbjct: 55 PVNCNTTHYRANW 67
>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
Length = 779
Score = 34.7 bits (76), Expect = 0.043
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1
Query: 500 PVNCNTTHYRAXW 462
PVNCNTTHYRA W
Sbjct: 79 PVNCNTTHYRANW 91
>SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)
Length = 142
Score = 33.5 bits (73), Expect = 0.10
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +3
Query: 441 TRGGARYPXRPIVSRITIHW 500
T GGA P RPIVSRITIHW
Sbjct: 34 TDGGA--PIRPIVSRITIHW 51
>SB_51122| Best HMM Match : UCR_TM (HMM E-Value=5.5)
Length = 131
Score = 31.1 bits (67), Expect = 0.53
Identities = 15/20 (75%), Positives = 15/20 (75%)
Frame = +3
Query: 441 TRGGARYPXRPIVSRITIHW 500
T GGA P RPIVS ITIHW
Sbjct: 36 TVGGA--PIRPIVSHITIHW 53
>SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)
Length = 237
Score = 30.7 bits (66), Expect = 0.71
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -1
Query: 500 PVNCNTTHYRA 468
PVNCNTTHYRA
Sbjct: 86 PVNCNTTHYRA 96
>SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 73
Score = 30.7 bits (66), Expect = 0.71
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -1
Query: 500 PVNCNTTHYRA 468
PVNCNTTHYRA
Sbjct: 29 PVNCNTTHYRA 39
>SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)
Length = 249
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 155 IAGFATHLMRRLRHSQVRGISIKLQE--EERERRDNYVPEVSALEHDIIEVDPDTKDML 325
I + ++MR+ R + R ++ +LQE E++R+D E++ L I +D KD L
Sbjct: 44 IRNLSRNIMRKWREAHERKVNKRLQELRIEKKRKDGEAKEIARLVTRKIPLDVLAKDWL 102
>SB_28728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 468 RPIVSRITIHW 500
RPIVSRITIHW
Sbjct: 19 RPIVSRITIHW 29
>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
Length = 996
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 349 NIVEVQHLQHILGVGVYFDDVMFESRHF--WDIVVTP 245
N+ ++ +H++ G D M E++HF W++V P
Sbjct: 361 NLGSSRNYKHLMDAGGILSDKMHENKHFHSWNVVYVP 397
>SB_55456| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 736
Score = 28.3 bits (60), Expect = 3.8
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +2
Query: 209 GISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNN-----INGLQLTQP 373
G+ +E +RE Y VSA +H + D + + +LD N+ +GL +T
Sbjct: 456 GLVTTARELDRETIATYTLTVSAYDHGVSSRHKDVQLTVNVLDENDNTPQITDGLTITTN 515
Query: 374 ATQGGYGG 397
++G GG
Sbjct: 516 ISEGAGGG 523
>SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 28.3 bits (60), Expect = 3.8
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 468 RPIVSRITIHW 500
RP+VSRITIHW
Sbjct: 34 RPVVSRITIHW 44
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +2
Query: 113 EEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDI 292
+ + +P++ LRN++ + L R + Q I K +EE+ + NY+ + EH +
Sbjct: 456 KNLQAMPSEGLRNQLTLMSVALQRSIFTIQHDHIKAKKREEQEQMAQNYL-RTARKEHKL 514
Query: 293 I 295
+
Sbjct: 515 M 515
>SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3)
Length = 163
Score = 27.5 bits (58), Expect = 6.6
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Frame = +2
Query: 137 KPLRNKIAGFATHLMRRLRHSQVRGIS-IKLQEEERERRDNYVPEVS-ALEHDII-EVDP 307
K LR ++ FA+H RRLR + +R K+ + ++ Y P VS A+ II ++D
Sbjct: 56 KALRGRVGLFASHCERRLRRTALRSRGWTKILKNHTLFQELY-PRVSRAISGTIIFDLDH 114
Query: 308 DTKDMLKMLD----FNNINGLQLTQPATQ 382
+ + + D ++N + +P+T+
Sbjct: 115 KRRSTISLQDNTFPRQSLNAKSIAEPSTR 143
>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 65 YYTRLTLDFDTNKRICEEIAIIPTKPLRNK 154
YY++LT D+D+ K EI I+P+ P+ K
Sbjct: 14 YYSKLTHDYDSGKLQSPEI-ILPSVPVVTK 42
>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1087
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 176 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKD 319
L +R RHS+ S + RE+ +++ ++ LE++ D DT++
Sbjct: 54 LEKRYRHSRKGTESHNTGTDTREKVLSHITQIQTLENESHNTDTDTRE 101
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,504,876
Number of Sequences: 59808
Number of extensions: 240847
Number of successful extensions: 600
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -