Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310A10f
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   1.4  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   2.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.2  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 352 WPATNTASYPGWLWWQA 402
           W  ++  S+P  +WW+A
Sbjct: 171 WICSSAISFPAIVWWRA 187


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 366 VSCRPLILLKSSIFNISLVSGSTSMMSCSRADTSGT 259
           ++C  + L  SS+  I+L  G ++ +S +R   +GT
Sbjct: 215 INCTYVALYPSSVQVIALGVGVSNFLSSTRTAETGT 250


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = -2

Query: 439 FFFFFYSYNLLITPATIATLGSWLC*LQAINIV 341
           ++F+ YS       + IA + +WL  ++ + ++
Sbjct: 29  YYFYDYSNRTQALESIIANIPTWLSFIRIVLVI 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,251
Number of Sequences: 438
Number of extensions: 2346
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)