Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310A09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    75   9e-15
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    75   9e-15
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    45   6e-06
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   3.0  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.8  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   9.0  

>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 74.5 bits (175), Expect = 9e-15
 Identities = 37/78 (47%), Positives = 45/78 (57%)
 Frame = -3

Query: 429 RVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXAI 250
           R D K F F+N K E+  L R+NPR+++WTVLYRR  KKG  EE               I
Sbjct: 23  RGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGI 82

Query: 249 VGASLSDIMAKRNMKPEV 196
           VGA+L  I  KRN +PEV
Sbjct: 83  VGANLDVIKEKRNQRPEV 100


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 74.5 bits (175), Expect = 9e-15
 Identities = 37/78 (47%), Positives = 45/78 (57%)
 Frame = -3

Query: 429 RVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXAI 250
           R D K F F+N K E+  L R+NPR+++WTVLYRR  KKG  EE               I
Sbjct: 23  RGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGI 82

Query: 249 VGASLSDIMAKRNMKPEV 196
           VGA+L  I  KRN +PEV
Sbjct: 83  VGANLDVIKEKRNQRPEV 100


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 45.2 bits (102), Expect = 6e-06
 Identities = 20/39 (51%), Positives = 22/39 (56%)
 Frame = -3

Query: 429 RVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK 313
           R D K F F  SKC     M+RNPRKV WT  YR+   K
Sbjct: 23  RNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHGK 61


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 516 LLPVSFPRVWTRRTRISRVASSPRAEFGTRVDGKTFTF 403
           ++P+ FPR W+   + S+VA  P  E    +    FT+
Sbjct: 170 IIPLFFPRAWSPTVKFSKVA-RPSPEQTCSIFSLIFTY 206


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 158 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 253
           +  L ACS C + TS       I S S AP++
Sbjct: 105 YFTLQACSTCTISTSSLSYSGTISSTSIAPSM 136


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 438 FGTRVDGKTFT-FLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK 313
           FG  +DG   +  L +K +    M+ + R+  W++ ++R +KK
Sbjct: 424 FGNELDGLNDSPLLLNKKDILLDMKESTRQKNWSLFFQRLYKK 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,597,400
Number of Sequences: 5004
Number of extensions: 28436
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)