Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310A09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689...    58   4e-09
05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962...    56   2e-08
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731...    56   2e-08
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938...    43   1e-04
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557...    38   0.004
04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605...    29   3.0  
01_05_0027 - 17331888-17331968,17332236-17332806,17333190-173333...    27   9.1  

>07_01_0849 +
           6896930-6896996,6897453-6897474,6897615-6897690,
           6897775-6897876,6898156-6898304,6898637-6898784
          Length = 187

 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 37/102 (36%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
 Frame = -3

Query: 495 RVWTRRTRISRVASSPRAEFG-TRVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKF 319
           +VWT   R S     P       R D + F F NSKC+     R  P K+TWT +YR++ 
Sbjct: 28  KVWTELCRFSGAKIYPGKGIRFIRADSQVFLFSNSKCKRYFHNRLKPAKLTWTAMYRKQH 87

Query: 318 KKG-QEEEXXXXXXXXXXXXXXAIVGASLSDIMAKRNMKPEV 196
           KK    E               +IVGA+L  I  KR  KPEV
Sbjct: 88  KKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEV 129


>05_05_0279 -
           23794964-23795111,23795486-23795634,23796120-23796221,
           23796309-23796384,23796578-23796588
          Length = 161

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 32/79 (40%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = -3

Query: 429 RVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-QEEEXXXXXXXXXXXXXXA 253
           R D + F F NSKC+     R  P K+TWT +YR++ KK    E               +
Sbjct: 25  RADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRS 84

Query: 252 IVGASLSDIMAKRNMKPEV 196
           IVGASL  I  KR  KPEV
Sbjct: 85  IVGASLEVIQKKRAEKPEV 103


>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
            34673237-34675178,34675588-34675658,34676158-34676307,
            34676963-34677038,34677131-34677232,34677707-34677855,
            34678214-34678364
          Length = 1172

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = -3

Query: 429  RVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-QEEEXXXXXXXXXXXXXXA 253
            R D + F F NSKC+     R  P K+TWT +YR++ KK    E               +
Sbjct: 1035 RADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRS 1094

Query: 252  IVGASLSDIMAKRNMKPEV 196
            IVGA+L  I  KR+ KPEV
Sbjct: 1095 IVGATLEVIQKKRSEKPEV 1113


>07_01_1199 +
           11391638-11391718,11393477-11393590,11393690-11393826,
           11393905-11394064
          Length = 163

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 19/34 (55%), Positives = 20/34 (58%)
 Frame = -3

Query: 429 RVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYR 328
           R D K F F  SKC     M+RNPRKV WT  YR
Sbjct: 23  RNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR 56


>01_05_0105 -
           18155135-18155297,18155379-18155515,18155621-18155734,
           18155768-18155806,18156838-18156993
          Length = 202

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = -3

Query: 411 FTFLNSKCEAAHLMRRNPRKVTWTVLYR 328
           F F  SKC     M+RNPRKV WT  YR
Sbjct: 67  FRFCRSKCHKNFKMKRNPRKVKWTKAYR 94


>04_04_1400 -
           33259716-33260069,33260172-33260219,33260471-33260596,
           33260850-33260900,33260963-33261055,33261217-33261272,
           33261465-33261522,33262306-33262365,33262513-33262623,
           33263368-33263949,33264026-33264097
          Length = 536

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 447 RAEFGTRVDGKTFTFLNSKCEAAHL-MRRNPRKVTWTVLY 331
           R   G R  G     L+S   A H+ +RRNP+ + W ++Y
Sbjct: 460 RIRNGQRQLGSAIRQLDSIFSAGHIFLRRNPKALVWAMVY 499


>01_05_0027 -
           17331888-17331968,17332236-17332806,17333190-17333335,
           17333412-17333459
          Length = 281

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +3

Query: 423 PPS--CRIRHEAKKQPEKSGSSGSKPAEKKPATA 518
           PPS  C  +H A KQP   G     P+ ++  TA
Sbjct: 39  PPSSSCSFKHVASKQPRTPGGQPVGPSRQRMPTA 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,785,573
Number of Sequences: 37544
Number of extensions: 200783
Number of successful extensions: 594
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)