Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310A09f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40) 96 1e-20
SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07) 92 3e-19
SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 90 9e-19
SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 90 9e-19
SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 90 9e-19
SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 90 9e-19
SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07) 88 5e-18
SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07) 87 8e-18
SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
Length = 154
Score = 96.3 bits (229), Expect = 1e-20
Identities = 46/78 (58%), Positives = 53/78 (67%)
Frame = -3
Query: 429 RVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXAI 250
R DGK F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE ++
Sbjct: 23 RQDGKVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSV 82
Query: 249 VGASLSDIMAKRNMKPEV 196
GASL +I+AKRN KPEV
Sbjct: 83 QGASLDNILAKRNQKPEV 100
>SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)
Length = 139
Score = 91.9 bits (218), Expect = 3e-19
Identities = 43/78 (55%), Positives = 52/78 (66%)
Frame = -3
Query: 429 RVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXAI 250
+ GK F +LN +CE A LMRRNPR+VTWTVLYRRK KKG +EE ++
Sbjct: 38 KFQGKVFNYLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSV 97
Query: 249 VGASLSDIMAKRNMKPEV 196
GASL +I+AKRN KPEV
Sbjct: 98 QGASLDNILAKRNQKPEV 115
>SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 113
Score = 90.2 bits (214), Expect = 9e-19
Identities = 43/74 (58%), Positives = 50/74 (67%)
Frame = -3
Query: 417 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXAIVGAS 238
K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE ++ GAS
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66
Query: 237 LSDIMAKRNMKPEV 196
L +I+AKRN KPEV
Sbjct: 67 LDNILAKRNQKPEV 80
>SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 90.2 bits (214), Expect = 9e-19
Identities = 43/74 (58%), Positives = 50/74 (67%)
Frame = -3
Query: 417 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXAIVGAS 238
K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE ++ GAS
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66
Query: 237 LSDIMAKRNMKPEV 196
L +I+AKRN KPEV
Sbjct: 67 LDNILAKRNQKPEV 80
>SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 90.2 bits (214), Expect = 9e-19
Identities = 43/74 (58%), Positives = 50/74 (67%)
Frame = -3
Query: 417 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXAIVGAS 238
K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE ++ GAS
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66
Query: 237 LSDIMAKRNMKPEV 196
L +I+AKRN KPEV
Sbjct: 67 LDNILAKRNQKPEV 80
>SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 90.2 bits (214), Expect = 9e-19
Identities = 43/74 (58%), Positives = 50/74 (67%)
Frame = -3
Query: 417 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXAIVGAS 238
K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE ++ GAS
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66
Query: 237 LSDIMAKRNMKPEV 196
L +I+AKRN KPEV
Sbjct: 67 LDNILAKRNQKPEV 80
>SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)
Length = 104
Score = 87.8 bits (208), Expect = 5e-18
Identities = 42/74 (56%), Positives = 49/74 (66%)
Frame = -3
Query: 417 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXAIVGAS 238
K F FLN +CE A LMRRNPR+VTWTVLYRR KKG +EE ++ GAS
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRMHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66
Query: 237 LSDIMAKRNMKPEV 196
L +I+AKRN KPEV
Sbjct: 67 LDNILAKRNQKPEV 80
>SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)
Length = 90
Score = 87.0 bits (206), Expect = 8e-18
Identities = 42/74 (56%), Positives = 49/74 (66%)
Frame = -3
Query: 417 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXAIVGAS 238
K F FLN +CE A LMRRNPR+VTWTVLYR K KKG +EE ++ GAS
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRCKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66
Query: 237 LSDIMAKRNMKPEV 196
L +I+AKRN KPEV
Sbjct: 67 LDNILAKRNQKPEV 80
>SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -3
Query: 318 KKGQEEEXXXXXXXXXXXXXXAIVGASLSDIMAKRNMKPEV 196
KKG +EE ++ GASL +I+AKRN KPEV
Sbjct: 2 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 42
>SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1163
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 508 GFFSAGLDPEDPDFSGCFFASCRIRHEGGWKNL 410
GF++ L+ E P F+A+ RI E G K +
Sbjct: 54 GFYNLYLEHESPSVKLQFYAAARIEREAGSKKI 86
>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 372 MRRNPRKVTWTVLYRR 325
M+RNPRK+ WT +R+
Sbjct: 1 MKRNPRKMKWTKAFRK 16
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,112,772
Number of Sequences: 59808
Number of extensions: 217162
Number of successful extensions: 605
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -