Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310A09f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-13|AAK18907.1| 159|Caenorhabditis elegans Ribosomal pr... 56 2e-08
L14730-2|AAB37562.2| 187|Caenorhabditis elegans C.elegans homeo... 35 0.031
AY647457-1|AAT67384.1| 187|Caenorhabditis elegans homeobox gene... 35 0.031
Z82263-6|CAJ76936.1| 383|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z82263-3|CAB62793.2| 451|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z82263-2|CAE46670.1| 445|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z75525-5|CAA99764.1| 162|Caenorhabditis elegans Hypothetical pr... 30 1.2
U64858-5|AAB18284.1| 409|Caenorhabditis elegans Hypothetical pr... 27 6.2
U23147-4|AAC46689.1| 464|Caenorhabditis elegans Hypothetical pr... 27 8.1
>AF003151-13|AAK18907.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 24.1 protein.
Length = 159
Score = 55.6 bits (128), Expect = 2e-08
Identities = 33/76 (43%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -3
Query: 429 RVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK---GQEEEXXXXXXXXXXXXX 259
R DGK FL+ K +RRNPR + WTVLYR K KK GQE+
Sbjct: 23 RTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNKKGTHGQEQVTRKKTKKSVQVVN 82
Query: 258 XAIVGASLSDIMAKRN 211
A+ G SL I+AKRN
Sbjct: 83 RAVAGLSLDAILAKRN 98
>L14730-2|AAB37562.2| 187|Caenorhabditis elegans C.elegans homeobox
protein 16 protein.
Length = 187
Score = 35.1 bits (77), Expect = 0.031
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 411 RFFHPPSCRIRHEAKKQPEKSGSSGSKPAEKKPATA 518
R+ PS RH ++ E +GSSGS EK+P TA
Sbjct: 58 RYSDRPSAGPRHRKSRKRESTGSSGSSEEEKRPRTA 93
>AY647457-1|AAT67384.1| 187|Caenorhabditis elegans homeobox gene 16
protein.
Length = 187
Score = 35.1 bits (77), Expect = 0.031
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 411 RFFHPPSCRIRHEAKKQPEKSGSSGSKPAEKKPATA 518
R+ PS RH ++ E +GSSGS EK+P TA
Sbjct: 58 RYSDRPSAGPRHRKSRKRESTGSSGSSEEEKRPRTA 93
>Z82263-6|CAJ76936.1| 383|Caenorhabditis elegans Hypothetical
protein C47A4.2c protein.
Length = 383
Score = 30.7 bits (66), Expect = 0.66
Identities = 20/83 (24%), Positives = 36/83 (43%)
Frame = +2
Query: 155 SFAALMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPFLNLRLY 334
S A ++ ++C TS + + ++A T+A F + L+ F C SW F +
Sbjct: 125 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWFCKKMDF 184
Query: 335 RTVHVTLRGFLLIKWAASHFEFR 403
+V+ L S F++R
Sbjct: 185 YKYYVSKGNRLRAAQEQSSFDYR 207
>Z82263-3|CAB62793.2| 451|Caenorhabditis elegans Hypothetical
protein C47A4.2b protein.
Length = 451
Score = 30.7 bits (66), Expect = 0.66
Identities = 20/83 (24%), Positives = 36/83 (43%)
Frame = +2
Query: 155 SFAALMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPFLNLRLY 334
S A ++ ++C TS + + ++A T+A F + L+ F C SW F +
Sbjct: 193 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWFCKKMDF 252
Query: 335 RTVHVTLRGFLLIKWAASHFEFR 403
+V+ L S F++R
Sbjct: 253 YKYYVSKGNRLRAAQEQSSFDYR 275
>Z82263-2|CAE46670.1| 445|Caenorhabditis elegans Hypothetical
protein C47A4.2a protein.
Length = 445
Score = 30.7 bits (66), Expect = 0.66
Identities = 20/83 (24%), Positives = 36/83 (43%)
Frame = +2
Query: 155 SFAALMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPFLNLRLY 334
S A ++ ++C TS + + ++A T+A F + L+ F C SW F +
Sbjct: 187 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWFCKKMDF 246
Query: 335 RTVHVTLRGFLLIKWAASHFEFR 403
+V+ L S F++R
Sbjct: 247 YKYYVSKGNRLRAAQEQSSFDYR 269
>Z75525-5|CAA99764.1| 162|Caenorhabditis elegans Hypothetical
protein C03D6.8 protein.
Length = 162
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 429 RVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR 325
R D F F S+C ++NPRK+ +T RR
Sbjct: 23 RNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARR 57
>U64858-5|AAB18284.1| 409|Caenorhabditis elegans Hypothetical
protein C16D9.4 protein.
Length = 409
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/49 (24%), Positives = 28/49 (57%)
Frame = +2
Query: 326 RLYRTVHVTLRGFLLIKWAASHFEFRNVKVFPSTLVPNSARGEEATREI 472
+L + VTL FL++ + ++ N++V P LV ++ + + +++ I
Sbjct: 46 KLILVIGVTLAIFLILSHYSEVTDYENIEVHPRNLVKSNEKPQRSSKVI 94
>U23147-4|AAC46689.1| 464|Caenorhabditis elegans Hypothetical
protein C18H9.5 protein.
Length = 464
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 167 LMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPF 316
+MA + S FIL + I + + A W+ + L V FF ++ PF
Sbjct: 397 IMAVISMSSWVSAFILPIVIGVICPTNSHAEWSRFYLFVAFFVVCTNLPF 446
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,992,543
Number of Sequences: 27780
Number of extensions: 165540
Number of successful extensions: 472
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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