Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310A09f
(521 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase ... 23 2.5
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 23 2.5
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 21 5.8
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 21 5.8
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 21 5.8
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 21 5.8
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 21 5.8
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 21 7.7
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 21 7.7
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 21 7.7
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 21 7.7
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 7.7
>AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase
protein.
Length = 510
Score = 22.6 bits (46), Expect = 2.5
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3
Query: 333 YRRKFKKGQEEE 298
YRR FKK QEE+
Sbjct: 259 YRRNFKKMQEEK 270
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 22.6 bits (46), Expect = 2.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 401 RNVKVFPSTLVPNSARGEEATREIRVLRVQTRGK 502
RN+ + T +S RGE+ ++ TRGK
Sbjct: 76 RNITIKLDTRAEDSTRGEQEANLGYTNKMSTRGK 109
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 5.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 343 PCYFTRIPPHQMGGFTF*IQE 405
P Y+ PP MG F IQE
Sbjct: 351 PVYYGNFPPRPMGPFVS-IQE 370
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 5.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 343 PCYFTRIPPHQMGGFTF*IQE 405
P Y+ PP MG F IQE
Sbjct: 351 PVYYGNFPPRPMGPFVS-IQE 370
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 5.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 343 PCYFTRIPPHQMGGFTF*IQE 405
P Y+ PP MG F IQE
Sbjct: 351 PVYYGNFPPRPMGPFVS-IQE 370
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 5.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 343 PCYFTRIPPHQMGGFTF*IQE 405
P Y+ PP MG F IQE
Sbjct: 351 PVYYGNFPPRPMGPFVS-IQE 370
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 5.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 343 PCYFTRIPPHQMGGFTF*IQE 405
P Y+ PP MG F IQE
Sbjct: 340 PVYYGNFPPRPMGPFVS-IQE 359
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.0 bits (42), Expect = 7.7
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = +1
Query: 343 PCYFTRIPPHQMGGF 387
P Y+ PP MG F
Sbjct: 118 PVYYGNFPPRPMGPF 132
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.0 bits (42), Expect = 7.7
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = +1
Query: 343 PCYFTRIPPHQMGGF 387
P Y+ PP MG F
Sbjct: 118 PVYYGNFPPRPMGPF 132
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.0 bits (42), Expect = 7.7
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = +1
Query: 343 PCYFTRIPPHQMGGF 387
P Y+ PP MG F
Sbjct: 118 PVYYGNFPPRPMGPF 132
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.0 bits (42), Expect = 7.7
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = +1
Query: 343 PCYFTRIPPHQMGGF 387
P Y+ PP MG F
Sbjct: 118 PVYYGNFPPRPMGPF 132
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.0 bits (42), Expect = 7.7
Identities = 10/37 (27%), Positives = 16/37 (43%)
Frame = +3
Query: 375 NGRLHILNSGM*RFFHPPSCRIRHEAKKQPEKSGSSG 485
+G LHI + G + CR +H + S + G
Sbjct: 162 SGELHIRDVGPEDGYKTYQCRTKHRLTGETRLSATKG 198
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,090
Number of Sequences: 438
Number of extensions: 2244
Number of successful extensions: 21
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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