Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310A09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ...    54   6e-08
At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)            54   8e-08
At2g44860.1 68415.m05585 60S ribosomal protein L24, putative           42   3e-04
At1g12450.1 68414.m01439 expressed protein                             28   3.3  
At5g19690.1 68418.m02342 oligosaccharyl transferase STT3 subunit...    27   5.8  
At1g32120.1 68414.m03952 expressed protein contains Pfam profile...    27   7.7  

>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
           ribosomal protein L24, Arabidopsis thaliana,
           EMBL:AC006282
          Length = 163

 Score = 54.0 bits (124), Expect = 6e-08
 Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = -3

Query: 429 RVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK-GQEEEXXXXXXXXXXXXXXA 253
           R D + F FLNSKC+     +  P K+ WT +YR++ KK   +E               +
Sbjct: 25  RSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRS 84

Query: 252 IVGASLSDIMAKRNMKPEV 196
           IVGA+L  I  KR  KPEV
Sbjct: 85  IVGATLEVIQKKRAEKPEV 103


>At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)
          Length = 164

 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = -3

Query: 429 RVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK-GQEEEXXXXXXXXXXXXXXA 253
           R D + F FLNSKC+     +  P K+ WT +YR++ KK   +E               +
Sbjct: 25  RSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRS 84

Query: 252 IVGASLSDIMAKRNMKPEV 196
           IVGA+L  I  KR  KPEV
Sbjct: 85  IVGATLEVIQKKRAEKPEV 103


>At2g44860.1 68415.m05585 60S ribosomal protein L24, putative
          Length = 159

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = -3

Query: 429 RVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEE 298
           R D K F F  SKC     M+RNPRKV WT  +R    K   ++
Sbjct: 23  RNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKD 66


>At1g12450.1 68414.m01439 expressed protein
          Length = 303

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
 Frame = +2

Query: 266 FWVLLVRFFACSSSWPFLNLRLYRTVHVTLRGFLLIKWAASHFE--------FRNVKVFP 421
           FWV L+    C  S  F+ ++      +       I W  + F         F +V +FP
Sbjct: 58  FWVKLISLVVCLGSLAFVIIKWVGPFLIEKELIPFINWVRNTFSIPVLGLLLFASVALFP 117

Query: 422 STLVPNS 442
           S L+P+S
Sbjct: 118 SILLPSS 124


>At5g19690.1 68418.m02342 oligosaccharyl transferase STT3 subunit
           family protein similar to SP|P39007 Oligosaccharyl
           transferase STT3 subunit {Saccharomyces cerevisiae};
           contains Pfam profile PF02516: Oligosaccharyl
           transferase STT3 subunit
          Length = 779

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 423 PPSCRIRHEAKKQPEKSGSS-GSKPAEKKP 509
           PP  RIR +AKK   K+ S   SK A+K P
Sbjct: 748 PPRNRIRGKAKKLKSKTSSGLSSKSAKKNP 777


>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 1206

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 420 HPPSCRIRHEAKKQPEKSGSSGSKPAEKKPATA 518
           HPPS R+  E  K P  SGS  S    K P ++
Sbjct: 846 HPPSPRVSKELNKTPSISGSP-SATRNKSPRSS 877


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,660,627
Number of Sequences: 28952
Number of extensions: 161379
Number of successful extensions: 458
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)