Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310A08f
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0893 + 22327485-22327671,22327756-22328627                       28   2.6  
03_02_0491 + 8854438-8854657,8854897-8854942,8855268-8855307,885...    27   4.5  
01_03_0220 - 13905808-13905831,13906694-13906885,13906960-139075...    27   4.5  
06_03_1223 - 28526869-28527192,28527515-28527634,28527742-285278...    27   7.8  

>08_02_0893 + 22327485-22327671,22327756-22328627
          Length = 352

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 46  WYKQCGSIYRLRLW*LFGYCFRC 114
           +Y +C   + +RLW LF  CF C
Sbjct: 136 FYDECKRRFSVRLWKLFTDCFNC 158


>03_02_0491 +
           8854438-8854657,8854897-8854942,8855268-8855307,
           8856025-8856090,8856237-8856318,8857036-8857595,
           8857681-8857771,8858300-8858316
          Length = 373

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 46  WYKQCGSIYRLRLW*LFGYCFRC 114
           +Y +C   + +RLW +F  CF C
Sbjct: 225 FYDECKRRFNVRLWKVFTDCFNC 247


>01_03_0220 -
           13905808-13905831,13906694-13906885,13906960-13907519,
           13910007-13910187
          Length = 318

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 46  WYKQCGSIYRLRLW*LFGYCFRC 114
           +Y +C   + +RLW +F  CF C
Sbjct: 134 FYDECKRRFNVRLWKIFCDCFNC 156


>06_03_1223 -
           28526869-28527192,28527515-28527634,28527742-28527816,
           28527905-28527964,28528271-28528370,28528664-28529148,
           28529243-28529437,28529532-28529762,28529851-28529967,
           28530247-28530330,28530755-28530893,28530939-28531090
          Length = 693

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 146 LGNYARQRARNEFI*VHQNLPSCF-STHKSRINEYGKKYLIPSHIPVI 286
           +G  +   A  EF+ +    PS   + HK R+ E  KKY I    P++
Sbjct: 526 VGGQSFSAAEIEFVILKMKTPSLMLALHKFRVTEEHKKYSIDDAEPLV 573


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,592,907
Number of Sequences: 37544
Number of extensions: 172482
Number of successful extensions: 273
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)