Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310A08f
         (415 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43075| Best HMM Match : FA_desaturase (HMM E-Value=5.5)             28   3.5  
SB_53942| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-08)                 27   4.6  
SB_50882| Best HMM Match : Metallophos (HMM E-Value=8.00001e-41)       27   4.6  
SB_49363| Best HMM Match : Laminin_G_2 (HMM E-Value=0.0048)            27   6.1  
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_55475| Best HMM Match : VQ (HMM E-Value=2)                          27   8.1  
SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)             27   8.1  

>SB_43075| Best HMM Match : FA_desaturase (HMM E-Value=5.5)
          Length = 292

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 221 THKSRINEYGKKYLIPSHIPVIYPR 295
           TH+ R+++Y +  LI  H   IYPR
Sbjct: 35  THRLRLSKYTQATLIQEHTGFIYPR 59



 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 218 STHKSRINEYGKKYLIPSHIPVIYPR 295
           STH+ R+++Y +  LI  H    YPR
Sbjct: 159 STHRLRLSKYTQATLIQVHTGYAYPR 184


>SB_53942| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-08)
          Length = 435

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 209 SCFSTHKSRINEYGKKYLIPSHIPVIYPRNFQAI*NKLKVL 331
           SC  +  S  N Y  ++L+P+H P  Y    Q    K++ L
Sbjct: 108 SCTGSVSSEANLYDPRFLVPTHPPKAYGAEKQEATKKMENL 148


>SB_50882| Best HMM Match : Metallophos (HMM E-Value=8.00001e-41)
          Length = 293

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 46  WYKQCGSIYRLRLW*LFGYCFRC 114
           +Y +C   Y ++LW  F  CF C
Sbjct: 136 FYDECKRRYNIKLWKTFTDCFNC 158


>SB_49363| Best HMM Match : Laminin_G_2 (HMM E-Value=0.0048)
          Length = 355

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 37  HNSWYKQCGSIYRLRLW 87
           H  WY  CG I  LR+W
Sbjct: 261 HCGWYPFCGQIRELRVW 277


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 194  HQNLPSCFSTHKSRINEYGKKYLIPSHIPV 283
            H N+PSC S   + +N Y    + P+  P+
Sbjct: 936  HNNVPSCQSATATPLNSYHSSLVNPTTTPI 965


>SB_55475| Best HMM Match : VQ (HMM E-Value=2)
          Length = 489

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 218 STHKSRINEYGKKYLIPSHIPVIYPR 295
           STH+ R+++Y +  LI  H    YPR
Sbjct: 117 STHRLRLSKYTQASLIQVHTGYAYPR 142


>SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)
          Length = 930

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 209 SCFSTHKSRINEYGKKYLIPSHIPVIY 289
           SC  +  S  N Y  ++L+P+H P  Y
Sbjct: 891 SCTGSVSSEANLYDPRFLVPTHPPKAY 917


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,748,904
Number of Sequences: 59808
Number of extensions: 224644
Number of successful extensions: 418
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)