Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310A08f
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   0.59 
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   3.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   3.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   5.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.3  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 0.59
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 303 WKFLG*MTGIWDGMRYFFPYSFILDLCVLKQD 208
           W F      +W  +   F  + IL+LCV+  D
Sbjct: 112 WLFTTDWCDVWRSLDVLFSTASILNLCVISLD 143


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 170 PFAVRNYPNRLKFLQRLYRHLK 105
           PF  +NYP   + + R Y+ +K
Sbjct: 81  PFMQQNYPYEWQLILRRYKIMK 102


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -2

Query: 261 RYFFPYSFIL 232
           R+FFP+SF++
Sbjct: 364 RFFFPFSFLI 373


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 221 THKSRINEYGKKYL 262
           TH +R+N YG  Y+
Sbjct: 509 THAARLNVYGLPYI 522


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 221 THKSRINEYGKKYL 262
           TH +R+N YG  Y+
Sbjct: 509 THAARLNVYGLPYI 522


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 258 ISFHPIYLSSIQETSKLYR 314
           I FH I L S+   S +YR
Sbjct: 459 IYFHSIVLGSLLNPSHMYR 477


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 136 FSLFG*LRTAKGEKRVYIGSSKLAI 210
           FSL     T+KGE R+  G  K AI
Sbjct: 395 FSLLRDAFTSKGEYRMSTGEMKEAI 419


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -2

Query: 276 IWDGMRYFFPYSFILD-LCV 220
           +WDG+   F Y+ +L+ +CV
Sbjct: 365 VWDGVCMCFIYASLLEFVCV 384


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -2

Query: 276 IWDGMRYFFPYSFILD-LCV 220
           +WDG+   F Y+ +L+ +CV
Sbjct: 334 VWDGVCMCFIYASLLEFVCV 353


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -2

Query: 276 IWDGMRYFFPYSFILD-LCV 220
           +WDG+   F Y+ +L+ +CV
Sbjct: 385 VWDGVCMCFIYASLLEFVCV 404


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -2

Query: 276 IWDGMRYFFPYSFILD-LCV 220
           +WDG+   F Y+ +L+ +CV
Sbjct: 334 VWDGVCMCFIYASLLEFVCV 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,079
Number of Sequences: 438
Number of extensions: 2331
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)