Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310A08f
(415 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11240.1 68417.m01820 serine/threonine protein phosphatase PP... 29 1.6
At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP... 28 2.2
At3g05580.1 68416.m00619 serine/threonine protein phosphatase, p... 28 2.9
At2g29400.1 68415.m03573 serine/threonine protein phosphatase PP... 28 2.9
At5g27840.2 68418.m03338 serine/threonine protein phosphatase PP... 27 3.8
At5g27840.1 68418.m03337 serine/threonine protein phosphatase PP... 27 3.8
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 26 8.7
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 26 8.7
At2g39840.1 68415.m04893 serine/threonine protein phosphatase PP... 26 8.7
>At4g11240.1 68417.m01820 serine/threonine protein phosphatase PP1
isozyme 6 (PP1BG) (TOPP6) identical to SP|P48486
Serine/threonine protein phosphatase PP1 isozyme 6 (EC
3.1.3.16) {Arabidopsis thaliana}
Length = 322
Score = 28.7 bits (61), Expect = 1.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 46 WYKQCGSIYRLRLW*LFGYCFRC 114
+Y +C Y +RLW F CF C
Sbjct: 133 FYDECKRRYNVRLWKTFTECFNC 155
>At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP1
isozyme 3 (TOPP3) / phosphoprotein phosphatase 1
identical to SP|P48483 Serine/threonine protein
phosphatase PP1 isozyme 3 (EC 3.1.3.16) {Arabidopsis
thaliana}, phosphoprotein phosphatase 1 GB:AAA32838
GI:166799 from [Arabidopsis thaliana]
Length = 322
Score = 28.3 bits (60), Expect = 2.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 46 WYKQCGSIYRLRLW*LFGYCFRC 114
+Y +C Y +R+W +F CF C
Sbjct: 133 FYDECKKRYSVRVWKIFTDCFNC 155
>At3g05580.1 68416.m00619 serine/threonine protein phosphatase,
putative similar to serine/threonine protein phosphatase
PP1 isozyme 8 SP:O82734 from [Arabidopsis thaliana]
Length = 318
Score = 27.9 bits (59), Expect = 2.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 46 WYKQCGSIYRLRLW*LFGYCFRC 114
+Y +C + +RLW +F CF C
Sbjct: 138 FYDECKRRFNVRLWKIFTDCFNC 160
>At2g29400.1 68415.m03573 serine/threonine protein phosphatase PP1
isozyme 1 (TOPP1) / phosphoprotein phosphatase 1
identical to SP|P30366| Serine/threonine protein
phosphatase PP1 isozyme 1 (EC 3.1.3.16) {Arabidopsis
thaliana}, phosphoprotein phosphatase 1 GI:166572
[Arabidopsis thaliana]
Length = 318
Score = 27.9 bits (59), Expect = 2.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 46 WYKQCGSIYRLRLW*LFGYCFRC 114
+Y +C + +RLW +F CF C
Sbjct: 149 FYDECKRRFNVRLWKIFTDCFNC 171
>At5g27840.2 68418.m03338 serine/threonine protein phosphatase PP1
isozyme 8 (TOPP8) identical to SP|O82734
Serine/threonine protein phosphatase PP1 isozyme 8 (EC
3.1.3.16) {Arabidopsis thaliana}
Length = 324
Score = 27.5 bits (58), Expect = 3.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 46 WYKQCGSIYRLRLW*LFGYCFRC 114
+Y +C + +RLW +F CF C
Sbjct: 138 FYDECKRRFNVRLWKVFTDCFNC 160
>At5g27840.1 68418.m03337 serine/threonine protein phosphatase PP1
isozyme 8 (TOPP8) identical to SP|O82734
Serine/threonine protein phosphatase PP1 isozyme 8 (EC
3.1.3.16) {Arabidopsis thaliana}
Length = 318
Score = 27.5 bits (58), Expect = 3.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 46 WYKQCGSIYRLRLW*LFGYCFRC 114
+Y +C + +RLW +F CF C
Sbjct: 138 FYDECKRRFNVRLWKVFTDCFNC 160
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 150 VITHGKGRETSLYRFIKTCHLVSAHTSLE*MNMEKNISF 266
V+ HG R + R + CH+++ + SLE E N F
Sbjct: 214 VLDHGS-RHPDMKRRAENCHILTCNVSLEYEKSEINAGF 251
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 150 VITHGKGRETSLYRFIKTCHLVSAHTSLE*MNMEKNISF 266
V+ HG R + R + CH+++ + SLE E N F
Sbjct: 214 VLDHGS-RHPDMKRRAENCHILTCNVSLEYEKSEINAGF 251
>At2g39840.1 68415.m04893 serine/threonine protein phosphatase PP1
isozyme 4 (TOPP4) / phosphoprotein phosphatase 1
identical to SP|P48484 Serine/threonine protein
phosphatase PP1 isozyme 4 (EC 3.1.3.16) {Arabidopsis
thaliana}, phosphoprotein phosphatase 1 GI:166801
(Arabidopsis thaliana); contains a Ser/Thr protein
phosphatase signature (PDOC00115); contains a
metallo-phosphoesterase motif (QDOC50185)
Length = 321
Score = 26.2 bits (55), Expect = 8.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 46 WYKQCGSIYRLRLW*LFGYCFRC 114
+Y +C + +R+W +F CF C
Sbjct: 146 FYDECKRRFNVRVWKVFTDCFNC 168
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,270,898
Number of Sequences: 28952
Number of extensions: 156647
Number of successful extensions: 242
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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