Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309H12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 48 8e-07
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 29 0.32
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 29 0.56
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 1.3
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 27 1.3
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 3.9
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.8
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 6.8
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|... 25 6.8
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 25 6.8
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 6.8
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 25 9.0
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 25 9.0
>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 48.0 bits (109), Expect = 8e-07
Identities = 24/67 (35%), Positives = 36/67 (53%)
Frame = +1
Query: 142 CGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERYSGKGFTAK 321
C + ++KPK+++H + R +C+DC F DY +H C+TE +RY KG
Sbjct: 7 CQDIIKKPKLDQH---RSRCHGAYFTCIDCNTTFERTDYRNHTSCMTEAQRYQ-KGLYRP 62
Query: 322 EKKGEKK 342
KK KK
Sbjct: 63 TKKELKK 69
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 29.5 bits (63), Expect = 0.32
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 187 TKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERYSG 303
T K NL D + FL K YE+ IK + EE++ G
Sbjct: 270 TVAHQKISNLPTTDLWSFFLDKRYETRIKKLKEEQKDQG 308
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 28.7 bits (61), Expect = 0.56
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Frame = +1
Query: 271 KCITEEERYSGKGFTAKEKKGEKKQNAWVEM----LQSVLDEQKSAPQNVRRIIET-ISK 435
K + + E+ K KEK+ +K +AW E +++L Q+ +N+++ E+ SK
Sbjct: 160 KKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEKKAMLMRQQRREENLKKRRESKKSK 219
Query: 436 HNNTPRKK 459
P+KK
Sbjct: 220 KGKAPKKK 227
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -2
Query: 205 FYSYI**DNAFPLWASEQTPHNDCM*KQPFLVKHVWIGAICFECKMYNLKFKNDQ 41
F+ ++ N P W EQT C K +++K W F+ Y L + DQ
Sbjct: 198 FFKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCAFDA--YILNYLTDQ 250
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 370 SVLDEQKSAPQNVRRIIETISKHNNTPRKKPKFINFVKNVC 492
+VL AP +++ + +I + P K PK ++ V+N+C
Sbjct: 268 TVLQFNPIAPTYMKKCLGSILRKEGVP-KSPKLLSLVENIC 307
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 250 KDYESHIKCITEEERYSGKGFTAKEKK 330
KD + K + + Y GKGFT +K
Sbjct: 259 KDVDESAKALMKARTYPGKGFTLASRK 285
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1
Query: 433 KHNNTPRKKPKF 468
KH++T RKKPKF
Sbjct: 444 KHDSTSRKKPKF 455
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.0 bits (52), Expect = 6.8
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Frame = +1
Query: 223 MDCFKDFLGKDYESHIKCITEEERYSGKGFTAKE-KKGEKKQNAWVEMLQSVLDEQ---- 387
MD + L + K +RY+ FTA E + E A+ ++L + LDE
Sbjct: 1022 MDVLEYELDRMASRKFKMCVSMQRYAK--FTADEIENTEFILRAYPDLLIAYLDEDPPKE 1079
Query: 388 -KSAPQNVRRIIETISKHNNTPRKKPKF 468
++ PQ +I+ S+ + ++KPK+
Sbjct: 1080 GETTPQLYAALIDGYSELDENKKRKPKY 1107
>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 684
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = +2
Query: 38 ILIIFKFKVIHFAFKTNSPNPHVFYKKWLFLHAVIVGSLFRSPKWKSIIS 187
+L+ F + + F T N K WL H++ GS ++ IS
Sbjct: 11 VLLAIVFYIFTYGFSTYRKNDTSAVKTWLEEHSIPYGSRSSPSDFQQFIS 60
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 310 FTAKEKKGE---KKQNAWVEMLQSVLDEQKSAPQNVRRIIETISKHNNTP 450
F + KK E KK WVE+ + +Q S+ ++ ++++ NN P
Sbjct: 4 FAPRNKKTEQEAKKSIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLP 53
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = +1
Query: 232 FKDFLGKDYESHIKCITEEERYSGKGFTAKEKKGEKKQNAWVE 360
F+D KD + T++++ + AKE++ +++ AW++
Sbjct: 998 FEDLSEKDLKKIEAKATKKKKLTRNEIKAKERRARERELAWLQ 1040
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 347 FCFFSPFFSLAVKP-FPEYLSSSVMHLI 267
+ FFSP FSL++ P YLS +V +++
Sbjct: 77 YLFFSPPFSLSIGPSLLVYLSIAVSYML 104
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 289 ERYSGKGFTAKEKKGEKKQNAWVEM 363
E Y+G GF A+++K + WV++
Sbjct: 296 EGYNGYGFDARKRKSWETYPLWVQV 320
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,326
Number of Sequences: 5004
Number of extensions: 50032
Number of successful extensions: 164
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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