Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309H12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0484 - 22621614-22621676,22621798-22621911,22622006-226224... 56 1e-08
01_05_0485 - 22628999-22629325,22630340-22630450,22630888-226310... 31 0.56
06_03_0815 - 24905641-24905874,24905974-24906044,24906678-249068... 29 1.7
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 29 2.3
01_06_0100 - 26424769-26425545,26425666-26425697,26425778-264258... 29 3.0
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888... 28 4.0
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574... 27 6.9
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522... 27 6.9
04_04_1566 + 34458976-34459111,34459761-34459915,34459996-344600... 27 6.9
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 27 6.9
12_02_1261 + 27410921-27413401 27 9.1
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540... 27 9.1
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 27 9.1
02_01_0690 - 5152224-5152386,5152490-5152687,5152815-5153014,515... 27 9.1
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51... 27 9.1
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755 27 9.1
>01_05_0484 -
22621614-22621676,22621798-22621911,22622006-22622453,
22623052-22623179,22623747-22623821,22623954-22624040
Length = 304
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/77 (33%), Positives = 42/77 (54%)
Frame = +1
Query: 118 MVVFTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERY 297
MV F C CG+ ++KPK+ H+ + + LSC+DC + F + + H +CI+E E+Y
Sbjct: 1 MVWFQCEDCGDDLKKPKLAGHFRSCSAYR---LSCIDCGEFFTQETVQGHTQCISEAEKY 57
Query: 298 SGKGFTAKEKKGEKKQN 348
KG + KQ+
Sbjct: 58 GPKGQNKASNNAQGKQD 74
>01_05_0485 -
22628999-22629325,22630340-22630450,22630888-22631034,
22631283-22631337,22631761-22632134,22632926-22633000,
22633419-22633670
Length = 446
Score = 31.1 bits (67), Expect = 0.56
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 214 LSCMDCFKDFLGKDYESHIKCITEEERY 297
LSC+DC + F + + H +CI+ E+Y
Sbjct: 85 LSCIDCGESFSQETVQGHAQCISGAEKY 112
>06_03_0815 -
24905641-24905874,24905974-24906044,24906678-24906847,
24906862-24906955,24907904-24907948,24908599-24909631
Length = 548
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 68 HFAFKTNSPNPHVFYKKWLFLHAVIVGSLFRSPKWKSIISLNVGIKTQ 211
H+A NS H+ + ++ + A + SLF+ P I + V + Q
Sbjct: 461 HYANFPNSVRKHILFVIFVLMDAEVRNSLFKEPVLHDAIKIGVNFRNQ 508
>02_05_0672 +
30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 29.1 bits (62), Expect = 2.3
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +2
Query: 329 RVRKNKMLGSRCCSQF*MSKKVHLKMYVELLRQ*ASITI---HHERSLSLLILSKMSVDI 499
+VR +KM+GS+C +F + ++ + L + S+ I HERSL+ IL M I
Sbjct: 326 QVRHDKMVGSKCSIKFMTDGILLREVQSDFLLKRYSVIILDEAHERSLNTDILIGMLSRI 385
Query: 500 KLIQKTL 520
I+K+L
Sbjct: 386 IKIRKSL 392
>01_06_0100 -
26424769-26425545,26425666-26425697,26425778-26425894,
26426067-26426118,26426229-26426281,26426883-26427585
Length = 577
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/53 (28%), Positives = 31/53 (58%)
Frame = +2
Query: 179 IISLNVGIKTQICHVWTVSKIF*EKIMNRISSALLKKKDTLEKVSQLRRKRVR 337
+I+LN+ T + +SK+ +M + + ++KKK T++++ +RRK R
Sbjct: 342 VITLNLMGMTWNLVILVLSKVAMTVMMMMVVAGMMKKKMTMKRMMTMRRKMKR 394
>04_02_0031 +
8874025-8874180,8882152-8882550,8882651-8882987,
8883234-8884060
Length = 572
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/87 (18%), Positives = 39/87 (44%)
Frame = +1
Query: 124 VFTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERYSG 303
V+ H ES +K K ++ + K DC ++L ++ +H+K +++
Sbjct: 461 VYLMRHKSESFEKFKKFQNEVQNHLGKTTKYLRSDCGGEYLSLEFGNHLKKCGIAPQFTP 520
Query: 304 KGFTAKEKKGEKKQNAWVEMLQSVLDE 384
G E++ ++M++S++ +
Sbjct: 521 PGTPQWNGVSERRNRTLLDMVRSMMSQ 547
>08_02_1236 + 25454371-25456801,25456891-25457177,25457258-25457416,
25457561-25457740,25457823-25458017,25459059-25459157,
25459508-25460137,25460250-25460591
Length = 1440
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/72 (20%), Positives = 40/72 (55%)
Frame = +2
Query: 248 EKIMNRISSALLKKKDTLEKVSQLRRKRVRKNKMLGSRCCSQF*MSKKVHLKMYVELLRQ 427
EKI+ S +L ++K L+ + +L+ ++ + + +GS+ +K H+ ++L++
Sbjct: 964 EKIIAHESISLKEEKRLLQDIKELKAQKKQLSSNMGSKAEMGEAFEQKEHIHEQQKILKK 1023
Query: 428 *ASITIHHERSL 463
+ + + + +SL
Sbjct: 1024 DSDVLLTNLKSL 1035
>04_04_1624 -
34849385-34849410,34849748-34851052,34852121-34852294,
34852386-34852456,34852563-34852618,34853047-34853185,
34853310-34853695,34853801-34853851,34853936-34854021,
34854112-34854553,34856241-34856315,34856457-34856593,
34856679-34856838,34856917-34857012,34857093-34857247,
34857900-34858032
Length = 1163
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 142 CGESVQKPKVEKHYLTKCRNKNPNLSCMDC 231
CG + + KVEK LT + NP +C +C
Sbjct: 199 CGRAEAEEKVEKLNLTSEQINNPQSACGNC 228
>04_04_1566 +
34458976-34459111,34459761-34459915,34459996-34460091,
34460170-34460329,34460415-34460551,34460650-34460724,
34460826-34460864
Length = 265
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 142 CGESVQKPKVEKHYLTKCRNKNPNLSCMDC 231
CG + + KVEK LT + NP +C +C
Sbjct: 200 CGRAEAEEKVEKLNLTSEQINNPQSACGNC 229
>01_05_0279 +
20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +1
Query: 307 GFTAKEKKGEKKQNAWVEM---LQSVLDEQKSAPQ-NVRRIIETISK--HNNTPRKKPKF 468
GFTAK KK K AW + LQ + K+A + +R + I K H+ +P + +F
Sbjct: 636 GFTAKMKKRIKHVKAWRRLALKLQDIKQRLKNADERKIRYDLSGIEKNGHSKSPEQSFQF 695
>12_02_1261 + 27410921-27413401
Length = 826
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +1
Query: 310 FTAKEKKGEKKQNAWVEMLQSVLDEQKSAPQNVRRIIETISKHNNTPRKKPKFIN 474
F ++ +K+ + E++ + D+ K+ P + + TISK N RKK K+++
Sbjct: 195 FEVPQETPTQKKRSVAELMDN--DDDKATPHH-QDSATTISKSNKRERKKSKYLS 246
>08_02_0580 -
18953208-18953513,18953668-18953868,18953929-18954009,
18954096-18954410,18954493-18954636,18954733-18954822,
18954907-18954983,18955122-18955182,18955264-18955490,
18955581-18955740,18955825-18956025,18956114-18956209,
18956380-18956565,18956641-18956810,18957044-18957275,
18958652-18959029
Length = 974
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 401 KMYVELLRQ*ASITIHHERSLSLLILSKM 487
+ Y LLR+ A++T H RS SL +LS +
Sbjct: 12 QQYRALLRKNATLTWRHRRSASLQLLSSL 40
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 27.1 bits (57), Expect = 9.1
Identities = 21/80 (26%), Positives = 34/80 (42%)
Frame = +1
Query: 235 KDFLGKDYESHIKCITEEERYSGKGFTAKEKKGEKKQNAWVEMLQSVLDEQKSAPQNVRR 414
KD G D E K + E+ + + + KK E E + +E + RR
Sbjct: 598 KDIDGMD-EDLKKLLKEQRQLEDEAAKIRRKKEEITDTMMFEKKRQ--EETRRRVDIKRR 654
Query: 415 IIETISKHNNTPRKKPKFIN 474
++ETI K + K KF++
Sbjct: 655 MLETIYKEEDMESSKRKFVD 674
>02_01_0690 -
5152224-5152386,5152490-5152687,5152815-5153014,
5153122-5153223,5153414-5153550,5153688-5153798,
5156092-5156344,5157954-5158052,5158449-5158739
Length = 517
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 112 VKHVWIGAICFECKMYNLKFKNDQYFIF 29
V + + A F C Y+L F D +FI+
Sbjct: 467 VTELGVAAFLFSCGWYDLAFGKDHFFIY 494
>02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-510769,
510843-510915,510996-511718,513752-514081,514124-514210,
514494-515250,515336-515399,515477-515609,515702-515801,
515952-516088,516195-516341,516428-516478,517083-517148
Length = 997
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 193 CRNKNPNL-SCMDCFKDFLGKDYESHIKCITEEERYSGKGFTAKEKKGEKKQNAWVEMLQ 369
C ++ NL SC+ DF+ + +TEE R KG E K E K+ A + Q
Sbjct: 910 CPHQVRNLKSCIKVALDFVSPENVQECIRLTEEFRLLPKGHRVNEDKLEVKKIALYALDQ 969
Query: 370 SVLD 381
++ D
Sbjct: 970 AIDD 973
>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
Length = 482
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +1
Query: 250 KDYESHIKCITEEERYSGKGF---TAKEKKGEKKQNAWVEMLQSVLDEQKSAPQNVRRII 420
KDYE I+ + + T K+ EK+ A E L V D+Q+S VR I+
Sbjct: 166 KDYEEEIERLKSDNAALSSELQNNTLKKLNMEKRMQALEEKLFVVEDQQRSLISYVREIV 225
Query: 421 E 423
+
Sbjct: 226 K 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,653,951
Number of Sequences: 37544
Number of extensions: 271822
Number of successful extensions: 847
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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