Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309H12f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27096| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.009
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 33 0.19
SB_34420| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_4802| Best HMM Match : zf-C2H2 (HMM E-Value=9.1e-19) 32 0.33
SB_42899| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064) 31 0.58
SB_43087| Best HMM Match : Ribosomal_S25 (HMM E-Value=3.2) 31 0.58
SB_27444| Best HMM Match : Phage_integrase (HMM E-Value=0.0013) 30 1.3
SB_16734| Best HMM Match : HLH (HMM E-Value=2.4e-08) 30 1.3
SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23) 30 1.3
SB_48551| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_17939| Best HMM Match : zf-C2H2 (HMM E-Value=1e-22) 29 2.3
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 3.1
SB_38996| Best HMM Match : Pepsin-I3 (HMM E-Value=1.7) 29 3.1
SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_21676| Best HMM Match : TrbF (HMM E-Value=0.99) 28 5.4
SB_57673| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_43023| Best HMM Match : Spindle_assoc (HMM E-Value=1.4) 27 7.1
SB_37977| Best HMM Match : PP2C (HMM E-Value=8.6e-08) 27 7.1
SB_36223| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 7.1
SB_52263| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 7.1
SB_19487| Best HMM Match : dsDNA_bind (HMM E-Value=5.2) 27 7.1
SB_157| Best HMM Match : dsDNA_bind (HMM E-Value=5.2) 27 7.1
SB_54976| Best HMM Match : MFS_1 (HMM E-Value=0.00064) 27 9.4
SB_13308| Best HMM Match : MFS_1 (HMM E-Value=0.0008) 27 9.4
SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40) 27 9.4
SB_52786| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10) 27 9.4
SB_42201| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_12715| Best HMM Match : Adeno_E1A (HMM E-Value=1.3) 27 9.4
SB_8983| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_27096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 133 CSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHI 270
C HC + V+ H LT+C K+ N C C + L D + H+
Sbjct: 843 CEHCSQVVEVSGFNDHLLTECDAKDRNAQCPRCKEVMLKVDLDDHL 888
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 32.7 bits (71), Expect = 0.19
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +1
Query: 97 STRVLQEMVVFTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGK-DYESHIK 273
STR + + TC CGES + +LT R + C C K +L K D H++
Sbjct: 1172 STRSHAKALHLTCFRCGESFSDRDEYRSHLTTHRT-GEKIVCKYCGKSWLRKADLTRHLR 1230
Query: 274 CITEEERY 297
T E Y
Sbjct: 1231 VHTGERPY 1238
>SB_34420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 544
Score = 31.9 bits (69), Expect = 0.33
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 127 FTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYES-HIKCITEEER 294
F C HCG+ + K ++ C +C K FL + S H++ + E+ R
Sbjct: 316 FKCGHCGKCLYNESYLKEHIRGVHKGQRPYKCGECGKCFLSISHLSDHVRTVHEKRR 372
>SB_4802| Best HMM Match : zf-C2H2 (HMM E-Value=9.1e-19)
Length = 374
Score = 31.9 bits (69), Expect = 0.33
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 127 FTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLG-KDYESHIKCITEEERYS 300
FTC HC ES + ++ + N+ P C C + F G +HI+ T E+ ++
Sbjct: 291 FTCGHCSESFALSNELRTHVVQHTNEKP-FKCGFCSRTFAGITTLNNHIRTHTGEKPFN 348
>SB_42899| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 31.1 bits (67), Expect = 0.58
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Frame = +1
Query: 127 FTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYE--SHIKCITEEERYS 300
F C HCG + ++ + K C C K F + YE HI T + Y+
Sbjct: 371 FKCKHCGRAFASHAAHDSHVRRTHTKEKPCICEYCGKAF-AQSYELKFHINMHTGAKPYT 429
Query: 301 ----GKGFTAKEKKGEKKQN 348
G+GF++ + + N
Sbjct: 430 CEKCGRGFSSPSSRDRHRTN 449
>SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064)
Length = 197
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 115 EMVVFTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKD-FLGKDYESHIK 273
E+ + CS CG + Q ++EKH +N D K G ++E ++K
Sbjct: 128 ELDLSPCSICGRNFQTDRLEKHQKVCAKNSTRKRKAFDMTKQRTAGTEHEKYVK 181
>SB_43087| Best HMM Match : Ribosomal_S25 (HMM E-Value=3.2)
Length = 134
Score = 31.1 bits (67), Expect = 0.58
Identities = 22/68 (32%), Positives = 30/68 (44%)
Frame = +1
Query: 145 GESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERYSGKGFTAKE 324
G+ +K EK LT L ++C KD L E + ER GK AKE
Sbjct: 12 GKKKKKKGDEKTELTIEDKYKRTLEEIECLKDELATRTELTRRARDTAERMKGKMLEAKE 71
Query: 325 KKGEKKQN 348
+ G ++QN
Sbjct: 72 EVGTEQQN 79
>SB_27444| Best HMM Match : Phage_integrase (HMM E-Value=0.0013)
Length = 940
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/87 (20%), Positives = 28/87 (32%)
Frame = +1
Query: 70 FCIQNK*PQSTRVLQEMVVFTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLG 249
FC Q + +S V V C C + C+ N C++ K +
Sbjct: 300 FCFQKESCRSKEVSPPCAVMACCFCNRPIDVDIAVALTEKGCQTINEKSDCLESSKIHVT 359
Query: 250 KDYESHIKCITEEERYSGKGFTAKEKK 330
H+KC + R + E K
Sbjct: 360 PGQRVHVKCCLDYTRRPAANKSVDENK 386
>SB_16734| Best HMM Match : HLH (HMM E-Value=2.4e-08)
Length = 178
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/86 (22%), Positives = 42/86 (48%)
Frame = +2
Query: 254 IMNRISSALLKKKDTLEKVSQLRRKRVRKNKMLGSRCCSQF*MSKKVHLKMYVELLRQ*A 433
+MN I LL+ LE+ ++ +KR + + + ++ HL+ +ELL++
Sbjct: 1 MMNNIEQ-LLEAAKILEERDEVAKKRSPNSSRNQKKSARRSPSYRRAHLRDCLELLKELV 59
Query: 434 SITIHHERSLSLLILSKMSVDIKLIQ 511
H+++ +L +L I+++Q
Sbjct: 60 PAPPEHQKATTLALLQSAQQYIQVLQ 85
>SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)
Length = 1084
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 61 GYTFCIQNK*PQSTRVLQEMVVFTCSHCGESVQKPKVEKHYLTKCRNKNPN 213
G+ F + Q + Q++ F C +CG++ + V K ++ +C NPN
Sbjct: 628 GWGFNLSGNLNQHMAIHQKVKPFKCVYCGKTFARSNVLKAHV-RCHTGNPN 677
>SB_48551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 560
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Frame = +1
Query: 127 FTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYE--SHIKCITEEERYS 300
F C HCG++ ++ + K C C K F + YE HI T + Y+
Sbjct: 437 FKCKHCGKAFASHAAHDSHVRRTHTKEKPCVCHFCGKAF-AQSYELKFHINMHTGAKPYT 495
Query: 301 ----GKGFTAKEKK 330
G+GF++ +
Sbjct: 496 CEKCGRGFSSPSSR 509
>SB_17939| Best HMM Match : zf-C2H2 (HMM E-Value=1e-22)
Length = 203
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +1
Query: 103 RVLQEMVVFTCSHCGESV-QKPKVEKHYLTKCRNKNPNLSCMDCFKDF-LGKDYESHIKC 276
R ++ +FTC +CG+ QK ++ H + + + P C C K F L +H++
Sbjct: 125 RTHSDVRMFTCQYCGKGFNQKGNLQAH-VYRHTGERP-FKCHICGKGFTLASTRTTHLRT 182
Query: 277 ITEEERYSGK 306
T E+ + K
Sbjct: 183 HTNEKPFQCK 192
>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1498
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +1
Query: 127 FTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGK-DYESHIKCITEEERYS 300
FTCS CG++ ++ +L K C C K F + H+ C +E Y+
Sbjct: 535 FTCSECGQAFKRFNDMNIHL-KTHTSGDAFKCNTCDKRFCSAVNLNRHMLCHNQERPYA 592
>SB_38996| Best HMM Match : Pepsin-I3 (HMM E-Value=1.7)
Length = 865
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 83 TNSPNPHVFYKKWLFLHAVIVGSLFRSP--KWKSIISLNVGIK 205
TN + H + KW L V+V S+ R+P K ++I+ +N+ ++
Sbjct: 524 TNGVSMHELHHKWRTLKEVLVLSISRNPTNKLRNILLMNLHVR 566
>SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 978
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +1
Query: 127 FTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKD-YESHIKCITEEER 294
F C CG +K + H+ + C C K F ++ + H++ + +E+
Sbjct: 146 FECDQCGRCFKKNETLDHHHQNTHSGEKPYQCTQCDKLFGSQEILDRHVRAVHNQEK 202
>SB_21676| Best HMM Match : TrbF (HMM E-Value=0.99)
Length = 681
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 65 IHFAFKTNSPNPHVFYKKWLFLHAVIVGSLFRSPKWKSIISLNVGIK 205
+H A N+ H + KW L V+V S+ R+ K +++L+V ++
Sbjct: 298 LHIARHVNTRCQHELHHKWRNLKEVLVPSISRNLTNKLLMNLHVRLR 344
>SB_57673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 508
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = +1
Query: 70 FCIQN-K*PQSTRVLQEMVV--FTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKD 240
FC N K QST + E C C +++ H L C P+L + +D
Sbjct: 26 FCKDNTKTSQSTTSVDEAKTKYLFCHLCSQTLPLGGTCSHELGDCGRYGPSLDGITLIED 85
Query: 241 FLGKDYESHIKCITEE 288
F+ + E+ I + +E
Sbjct: 86 FVSQREEARIVQVIDE 101
>SB_43023| Best HMM Match : Spindle_assoc (HMM E-Value=1.4)
Length = 138
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +1
Query: 319 KEKKGEKKQNAWVEMLQSVLDEQKSAPQNVRRIIETISKHNN 444
+ K+ E+K +++++ DE++ + R+ +ETI N
Sbjct: 40 RAKEAEEKNEYLSQLVKAYQDEKEKGSEETRKTLETIENEKN 81
>SB_37977| Best HMM Match : PP2C (HMM E-Value=8.6e-08)
Length = 662
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 79 QNK*PQSTRVLQEMVVFTCSHCGESVQKPKVEKH 180
+N TR+ +V CS CGES+ +++ H
Sbjct: 151 ENSSEGETRLALPNIVLPCSKCGESINICRLQSH 184
>SB_36223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 7/34 (20%)
Frame = -3
Query: 510 WISFMSTD-------IFDKINKLRLLSWCIVMLA 430
W++F+ T +FD +++LR L+W +++LA
Sbjct: 22 WVTFVGTSTFHGLHYLFDALSRLRKLAWALLLLA 55
>SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 935
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 121 VVFTCSHCG-ESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGK 252
VVF CS+C ES K EKH ++ + SC C + F K
Sbjct: 3 VVFKCSYCAIESSDKEVAEKH-VSSGDCLSLEFSCPTCGRTFQSK 46
>SB_52263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 133 CSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGK-DYESHIKCITEEERYSGKG 309
C CG+ + ++ + L R+K PNL +D +K + + ++ + + E +Y+G G
Sbjct: 815 CEDCGKPYIRLRLCRALLQAARHKGPNLVKVDAYKGTVVEVPLDAVLNGLPLEWKYAGWG 874
Query: 310 FTAKEKKGEKKQ 345
T +G+ Q
Sbjct: 875 -TVHRMQGKTIQ 885
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +1
Query: 130 TCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERYS 300
TC CG+ P+ +++ K C+ C + F K ++ C +E E S
Sbjct: 2824 TCELCGKKFCTPEYVAKHVSMVHGKERPYRCIHCDRGFTSKINLTNHPCRSEVESSS 2880
>SB_19487| Best HMM Match : dsDNA_bind (HMM E-Value=5.2)
Length = 126
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 352 WVEMLQSVLDEQKSAPQNVRRIIETISKHNNTPRKKPKFINFVK 483
W EM+ + + ++ A Q ++E + K KK KF+ K
Sbjct: 60 WKEMILAATEARERAEQEKLTLVEKVQKLEELCSKKDKFVMVTK 103
>SB_157| Best HMM Match : dsDNA_bind (HMM E-Value=5.2)
Length = 97
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 352 WVEMLQSVLDEQKSAPQNVRRIIETISKHNNTPRKKPKFINFVK 483
W EM+ + + ++ A Q ++E + K KK KF+ K
Sbjct: 31 WKEMILAATEARERAEQEKLTLVEKVQKLEELCSKKDKFVMVTK 74
>SB_54976| Best HMM Match : MFS_1 (HMM E-Value=0.00064)
Length = 538
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +2
Query: 14 TTYTSENKILI-IFKFKVIHFAFKTNSPNPHVFY---KKWLFLHAVIVGSLFRSPKWKSI 181
T YT ++ L + FKV++ S + + WLFL ++ + + W S
Sbjct: 392 TVYTFSDRFLSHVGHFKVVYMGLLCYSLRFFYYSYCTRPWLFLPIELIQGVTTAAVWTSF 451
Query: 182 ISLNVGIKTQI 214
+S VG KT+I
Sbjct: 452 VSY-VGSKTEI 461
>SB_13308| Best HMM Match : MFS_1 (HMM E-Value=0.0008)
Length = 700
Score = 27.1 bits (57), Expect = 9.4
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 316 AKEKKGEKKQNAWVEMLQSVLDEQKSAPQNVRRIIET-ISKHNNTPRKKPKFI-NFVKNV 489
AK KK+NA V + S L ++ V+ E+ I K N +K P +I N K
Sbjct: 187 AKPSNQNKKENATVMLGASGLTNKEMEDAKVQSEKESEIEKKNPNKKKAPMYINNKEKKE 246
Query: 490 CGHKTNPKDI 519
H N +++
Sbjct: 247 ITHSGNSEEV 256
>SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40)
Length = 595
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +1
Query: 94 QSTRVLQEMVVFTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDF 243
QST TCS CG+S P+ + ++ + P C C K F
Sbjct: 424 QSTGNTITKATCTCSFCGKSFGNPRALELHVRRHSGHRP-YDCQFCSKSF 472
>SB_52786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 392
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +1
Query: 124 VFTCSHCGESVQKP-KVEKHYLTKCRNKNPNLSCMDCFKDFLGK-DYESH 267
VF C CG+ ++P + H L +K +C C K FL K D + H
Sbjct: 272 VFRCLECGKEFRRPSSLSTHKLIHSDHK--PYACTYCDKKFLRKSDMKKH 319
>SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10)
Length = 1318
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 91 PQSTRVLQE-MVVFTCSHCGESVQKPKVEKHYLTKCRNKNPN 213
P++T V Q M+ TC++ + ++ K YL +C+ +NP+
Sbjct: 759 PEATPVAQRPMLPTTCNNPLRNGSIRELNKAYLNRCQRENPS 800
>SB_42201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 27.1 bits (57), Expect = 9.4
Identities = 31/143 (21%), Positives = 54/143 (37%), Gaps = 5/143 (3%)
Frame = +1
Query: 73 CIQNK*PQSTRVLQEMVVFTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGK 252
C+ K +Q++ F + + KP + + Y C + P + F D L K
Sbjct: 210 CMSAKGSLDAASVQQIKQFGLNMQRRLLMKPDIGRKYAALCSPQVPFTDML--FGDDLQK 267
Query: 253 DYESHIK----CITEEE-RYSGKGFTAKEKKGEKKQNAWVEMLQSVLDEQKSAPQNVRRI 417
+ IK C + + R SG + + +K A + + + + AP
Sbjct: 268 HLKDIIKLGPSCSQKRDPRASGPLKSTTTEGAQKTGTAKITSFGNEGSQLRRAPSRASAH 327
Query: 418 IETISKHNNTPRKKPKFINFVKN 486
S NNT + KF+ F+ N
Sbjct: 328 HSRPSLLNNTKSQTAKFLGFILN 350
>SB_12715| Best HMM Match : Adeno_E1A (HMM E-Value=1.3)
Length = 909
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +1
Query: 355 VEMLQSVLDEQKSAPQNVRRIIETISKHNNTPRKKPKFINFVKNVCGHKTNPKDI 519
V +L+ + KS P NV + ++ + N + +N +N CG + +P ++
Sbjct: 193 VRLLKKTRTDDKSGPSNVTLLSQSRHEDNESVPSSVTLLNQSRNECG-EIDPSNV 246
>SB_8983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 606
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 54 NLRLYI-LHS-KQIAPIHTCFTRNGCFYMQSL 143
+++ Y LH+ K+IAP H CF+R C +L
Sbjct: 8 SMKFYFRLHTNKRIAPAHACFSRLRCLIETTL 39
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,656,474
Number of Sequences: 59808
Number of extensions: 349870
Number of successful extensions: 1079
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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