Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309H12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    26   0.27 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.62 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.62 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   3.3  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   5.8  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   5.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +1

Query: 148 ESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERYSGKGFTAKEK 327
           E + + KV +++  K +NK  N++   C K  L K    H+     E  YSGK  + +  
Sbjct: 584 EILGEAKVLQNFDIKDKNKKVNVAGCRCVKGILLKSGLYHV-LRGNENIYSGKLISMRHL 642

Query: 328 KGE 336
           K E
Sbjct: 643 KEE 645


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = +1

Query: 304 KGFTAKEKKGEKKQNAWVEMLQSVLDEQKSAPQNVRRIIETISK 435
           KG+T + K+G+ +    +E L ++L   +   + +R  ++ + K
Sbjct: 155 KGWTVERKEGKVEGKCLIEALDAILPPTRPTDKALRLPLQDVYK 198


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = +1

Query: 304 KGFTAKEKKGEKKQNAWVEMLQSVLDEQKSAPQNVRRIIETISK 435
           KG+T + K+G+ +    +E L ++L   +   + +R  ++ + K
Sbjct: 212 KGWTVERKEGKVEGKCLIEALDAILPPTRPTDKALRLPLQDVYK 255


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 304 KGFTAKEKKGEKKQNAWVEMLQSVL 378
           KG+T + K+G+ +    +E L ++L
Sbjct: 139 KGWTVERKEGKVEGKCLIEALDAIL 163


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 454 KKPKFINFVKNVCGHKTN 507
           K+PK I+ + N C +  N
Sbjct: 299 KEPKIISSLSNSCNYSNN 316


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 302 EKVSQLRRKRVRKN 343
           +KV QL++KR +KN
Sbjct: 1   QKVHQLKKKRRKKN 14


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 445 YCYACLLSQ*FYVHFEVHFFAHLKL 371
           YC AC L +  Y+H +   +  LK+
Sbjct: 542 YCVACGLHRDTYIHAQQIAWMALKM 566


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,924
Number of Sequences: 438
Number of extensions: 3434
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)