Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309H11f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    26   0.23 
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    26   0.23 
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    26   0.23 
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    23   1.6  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   3.8  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   8.7  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   8.7  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.7  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 25.8 bits (54), Expect = 0.23
 Identities = 19/72 (26%), Positives = 26/72 (36%)
 Frame = -2

Query: 286 GSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQGSYRYALGTTAVLKQRVIPLEVESILV 107
           GSG   D C + N   A  +R  E   +    QGS  Y           ++ L V    V
Sbjct: 144 GSGDFHDSCTVNNYQDASNVRNCELVGLADLNQGS-DYVRSKIIEYMNHLVDLGVAGFRV 202

Query: 106 RPTEAFQPMDVE 71
              +   P D+E
Sbjct: 203 DAAKHMWPADLE 214


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 25.8 bits (54), Expect = 0.23
 Identities = 19/72 (26%), Positives = 26/72 (36%)
 Frame = -2

Query: 286 GSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQGSYRYALGTTAVLKQRVIPLEVESILV 107
           GSG   D C + N   A  +R  E   +    QGS  Y           ++ L V    V
Sbjct: 145 GSGDFHDSCTVNNYQDASNVRNCELVGLADLNQGS-DYVRSKIIEYMNHLVDLGVAGFRV 203

Query: 106 RPTEAFQPMDVE 71
              +   P D+E
Sbjct: 204 DAAKHMWPADLE 215


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 25.8 bits (54), Expect = 0.23
 Identities = 19/72 (26%), Positives = 26/72 (36%)
 Frame = -2

Query: 286 GSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQGSYRYALGTTAVLKQRVIPLEVESILV 107
           GSG   D C + N   A  +R  E   +    QGS  Y           ++ L V    V
Sbjct: 145 GSGDFHDSCTVNNYQDASNVRNCELVGLADLNQGS-DYVRSKIIEYMNHLVDLGVAGFRV 203

Query: 106 RPTEAFQPMDVE 71
              +   P D+E
Sbjct: 204 DAAKHMWPADLE 215


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 461 YLLHLSSWICR*ITICNHGIWIS 393
           Y + L   I R +++C +G WI+
Sbjct: 321 YFISLGLLILRLVSVCFYGSWIN 343


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 369 ASNTAIAARDPD 404
           ASN A++ RDPD
Sbjct: 7   ASNPAVSERDPD 18


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -3

Query: 117 LFWYAQQKHFSLW 79
           L +Y   KH+S W
Sbjct: 12  LLYYIYSKHYSYW 24


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 366 PASNTAIAARDPDPM 410
           PAS  ++ A DPD M
Sbjct: 102 PASQQSLDASDPDAM 116


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 366 PASNTAIAARDPDPM 410
           PAS  ++ A DPD M
Sbjct: 258 PASQQSLDASDPDAM 272


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,854
Number of Sequences: 336
Number of extensions: 2740
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)