Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309H11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...   116   3e-27
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc...    45   8e-06
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy...    30   0.18 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   1.3  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   1.7  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   5.2  

>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score =  116 bits (278), Expect = 3e-27
 Identities = 57/110 (51%), Positives = 72/110 (65%)
 Frame = -2

Query: 466 PHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDL 287
           PH++ I  HGS DKLPY  +GSGSLAA++V E  ++ D+   E  +LV++AI AGIFNDL
Sbjct: 143 PHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDL 202

Query: 286 GSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQGSYRYALGTTAVLKQRV 137
           GSGSN DL VI       Y R Y + N +  KQ  Y Y  GTTAVLK+ +
Sbjct: 203 GSGSNCDLVVIDEEKATPY-RGYSKPNERATKQSKYTYDRGTTAVLKEDI 251



 Score = 34.7 bits (76), Expect = 0.008
 Identities = 15/19 (78%), Positives = 15/19 (78%)
 Frame = -1

Query: 521 YQGHIGAALVLGGVDRTGP 465
           YQGHIGA LVLGG D  GP
Sbjct: 125 YQGHIGAYLVLGGYDCKGP 143


>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 44.8 bits (101), Expect = 8e-06
 Identities = 23/85 (27%), Positives = 42/85 (49%)
 Frame = -2

Query: 460 IYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGS 281
           +Y I   GS+ K P A  GSGS       +A ++ +M +EE  + +++A+A  +  D  S
Sbjct: 135 VYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSS 194

Query: 280 GSNVDLCVIRNTGPAQYLRTYEEAN 206
           G  + + ++   G  +     + AN
Sbjct: 195 GGTIRMVILNKDGMERKFFAIDTAN 219


>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 24/98 (24%), Positives = 40/98 (40%)
 Frame = -2

Query: 481 LTEPVPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAG 302
           + E  P +Y   P G+  +     +GSGS  A +     + +DM  EE + L+   +   
Sbjct: 147 IDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAEVLILKVLRQV 206

Query: 301 IFNDLGSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQ 188
           +   L S  NV L  +   G        E A+   ++Q
Sbjct: 207 MEEKLDS-KNVQLAKVTAEGGFHIYNDEEMADAVAREQ 243


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
 Frame = +2

Query: 101  WAYQNRFY--LERYYTLLKHSSCTKSISIRTLLFPLHISFFISS*ILGRASVTNNAQVNV 274
            WA+ N++   L+RY +LLK+++  + + +R +   +     +   +   AS TN+     
Sbjct: 1525 WAHWNQYQAILKRYVSLLKNNAIDQKVVVRLITAVVSALRPLDDAV---ASYTNSEMNIE 1581

Query: 275  RT*TQVIEYTSSNSI-SDKLFSFFLIHITFPTCFKHCHSRKRS 400
            +   Q  +   ++S+ S++ F+  L +  FPT   + H R  S
Sbjct: 1582 QFDGQKKKCVLASSLPSEERFTEVLTNDFFPTLMLYLHIRDES 1624


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = -2

Query: 436  SVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLCV 257
            SV KLP  T+   +  A   F  G+   +    GK LV+D ++  I+N+  S  N+ LC 
Sbjct: 2381 SVYKLPIQTIAVNARNAEIAFSTGFYCCVVNVNGKILVKDKLSR-IYNE-NSDENI-LCS 2437

Query: 256  IRNTG 242
               TG
Sbjct: 2438 CFYTG 2442


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 220 YEEANVKGKKQGSYRYALGTTAVLKQRVIPLEVESILVRP 101
           YE  NV+  K+ +Y++      V+  ++I  E  SIL  P
Sbjct: 334 YETINVEETKKETYKFTRSIKTVIPNKLISNESISILSIP 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,960
Number of Sequences: 5004
Number of extensions: 42240
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)