Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309H11f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 122 1e-28
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 40 0.001
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 40 0.001
06_01_0387 - 2770387-2770514,2770963-2771063,2771152-2771255,277... 36 0.015
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 33 0.18
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 29 2.3
01_01_0117 + 864966-865686,866860-866883,867006-868063 28 4.0
04_01_0314 - 4243928-4244361,4245178-4245415 28 5.2
02_01_0562 + 4129852-4130235,4130355-4130453,4131046-4131146,413... 27 6.9
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 122 bits (295), Expect = 1e-28
Identities = 59/115 (51%), Positives = 78/115 (67%), Gaps = 1/115 (0%)
Frame = -2
Query: 466 PHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDL 287
PH++ +YPHGS D LP+ATMGSGSLAAM+VFE+ +K + EEG +LV +AI GIFNDL
Sbjct: 146 PHLHTVYPHGSTDTLPFATMGSGSLAAMSVFESKYKEGLTREEGIQLVAEAIRGGIFNDL 205
Query: 286 GSGSNVDLCVIRNTGPAQYLRTYEEANVKG-KKQGSYRYALGTTAVLKQRVIPLE 125
GSGSNVD+CVI G +YLR ++ N + Y + G T VL ++ L+
Sbjct: 206 GSGSNVDVCVI-TKGKTEYLRNHQLPNPRTYVSSKGYNFTKGQTVVLSTKITQLK 259
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = -1
Query: 521 YQGHIGAALVLGGVDRTGP 465
YQGH+ AALVLGGVD TGP
Sbjct: 128 YQGHVSAALVLGGVDVTGP 146
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = -2
Query: 460 IYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGS 281
I+ + G++ + P+A GSGS + + WK M++EE +K V ++ I D S
Sbjct: 136 IFSVPLGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARDGAS 195
Query: 280 GSNVDLCVIRNTG 242
G V I G
Sbjct: 196 GGVVRTVTINADG 208
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = -2
Query: 460 IYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGS 281
I+ + G++ + P+A GSGS + + WK M++EE +K V ++ I D S
Sbjct: 136 IFSVPLGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARDGAS 195
Query: 280 GSNVDLCVIRNTG 242
G V I G
Sbjct: 196 GGVVRTVTINADG 208
>06_01_0387 -
2770387-2770514,2770963-2771063,2771152-2771255,
2771345-2771507,2771550-2771596,2772818-2772946
Length = 223
Score = 36.3 bits (80), Expect = 0.015
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = -2
Query: 475 EPVPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIF 296
E P +Y + G+ ++GSGSL A + + G++ M EE +L R AI F
Sbjct: 112 EKGPGLYYVDSEGARLMGSRFSVGSGSLYAYGILDEGYRYVMPVEEAAELARRAIYQATF 171
Query: 295 NDLGSGSNVDL 263
D SG V +
Sbjct: 172 RDGASGGCVSV 182
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 32.7 bits (71), Expect = 0.18
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = -2
Query: 406 GSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNTG----P 239
G G+ A+ + W+ DM EE KLV + ++ D S + + I G P
Sbjct: 505 GFGNHMAIPILRTEWREDMTFEEAVKLVEKCLLVLLYRDRSSINKFQIAKITTEGATIYP 564
Query: 238 AQYLRTY 218
L+TY
Sbjct: 565 PYSLKTY 571
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Frame = -1
Query: 344 GRRKKACP---RCYCCWY 300
G +K ACP RCY CWY
Sbjct: 139 GHQKSACPGSTRCYNCWY 156
>01_01_0117 + 864966-865686,866860-866883,867006-868063
Length = 600
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +1
Query: 118 ILPREVLHAA*AQQLYQEHIYTN---LAFSPSH*LLHKFLDIGQ 240
IL VL + +Y H+ N L S H LLHKF+ + Q
Sbjct: 76 ILDHPVLGSCKVTMIYYRHVIMNAIPLVDSSPHCLLHKFISVNQ 119
>04_01_0314 - 4243928-4244361,4245178-4245415
Length = 223
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 12 FFIVMFYSKLIVNI*RLV*GSTSIG*NASVGRTKIDST-SRGITRCLSTAVVPRAYLYEP 188
F++V+ S +++ I RL+ S SV + + ++T SR I L+T++ R+YL P
Sbjct: 82 FYLVLLVSSILLAIIRLICISEINNPQKSVSKLRHNTTTSRTIVVGLTTSLKNRSYLNSP 141
>02_01_0562 +
4129852-4130235,4130355-4130453,4131046-4131146,
4131229-4131300,4131712-4131802,4132005-4132085,
4132263-4132331,4132634-4132690,4132776-4132898,
4133000-4133038,4133255-4133380
Length = 413
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 98 CWAYQNRFYLERYYTLLKHSSCTKS 172
C+ + +FY E LLKHSS T +
Sbjct: 389 CYLFARKFYPEALNNLLKHSSYTST 413
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,966,403
Number of Sequences: 37544
Number of extensions: 281657
Number of successful extensions: 679
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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