Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309H11f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 92 3e-19
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.1
SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012) 29 3.1
SB_56011| Best HMM Match : Exo_endo_phos (HMM E-Value=0.13) 28 4.1
SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22) 28 4.1
SB_46984| Best HMM Match : Exo_endo_phos (HMM E-Value=4.2e-09) 28 4.1
SB_46241| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_43221| Best HMM Match : PHF5 (HMM E-Value=2) 28 4.1
SB_41253| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09) 28 4.1
SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17) 28 4.1
SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054) 28 4.1
SB_9246| Best HMM Match : RHS_repeat (HMM E-Value=5.5e-06) 28 4.1
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34) 27 7.1
SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28) 27 7.1
SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 91.9 bits (218), Expect = 3e-19
Identities = 44/65 (67%), Positives = 50/65 (76%)
Frame = -2
Query: 343 EEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQGSYRYALG 164
EE K+LVRD IAAGIFNDLGSGSNVDLCVI G Y+R Y+ AN+KG++QG Y Y G
Sbjct: 2 EEAKQLVRDGIAAGIFNDLGSGSNVDLCVITKDG-VDYIRPYDVANLKGERQGRYTYKRG 60
Query: 163 TTAVL 149
TT VL
Sbjct: 61 TTVVL 65
>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 32.3 bits (70), Expect = 0.25
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = -2
Query: 466 PHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDL 287
P +Y + G+ ++GSGS A V ++G+K DM+ EE L +I D
Sbjct: 163 PGLYYVDSDGTRLSNQMFSVGSGSTYAYGVMDSGYKYDMSPEEAYDLGVRSIYHATHRDA 222
Query: 286 GSGSNVD 266
SG V+
Sbjct: 223 YSGGVVN 229
>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1858
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 284 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 385
T +++Y SSN + K F F IH P HCH
Sbjct: 1016 TSLVDYVISSNRVQQK-FQFLKIHPLLPHISDHCH 1049
>SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)
Length = 826
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 284 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 385
T +++Y SSN + K F F IH P HCH
Sbjct: 591 TSLVDYVISSNRVQQK-FQFLKIHPLLPHISDHCH 624
>SB_56011| Best HMM Match : Exo_endo_phos (HMM E-Value=0.13)
Length = 307
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 284 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 385
T +++Y SSN + K F F IH P HCH
Sbjct: 195 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 228
>SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22)
Length = 726
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 284 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 385
T +++Y SSN + K F F IH P HCH
Sbjct: 265 TSLVDYAISSNRVRQK-FQFLKIHPLLPHISDHCH 298
>SB_46984| Best HMM Match : Exo_endo_phos (HMM E-Value=4.2e-09)
Length = 476
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 284 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 385
T +++Y SSN + K F F IH P HCH
Sbjct: 246 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 279
>SB_46241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 284 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 385
T +++Y SSN + K F F IH P HCH
Sbjct: 451 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 484
>SB_43221| Best HMM Match : PHF5 (HMM E-Value=2)
Length = 361
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 284 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 385
T +++Y SSN + K F F IH P HCH
Sbjct: 102 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 135
>SB_41253| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09)
Length = 404
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 284 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 385
T +++Y SSN + K F F IH P HCH
Sbjct: 246 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 279
>SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 284 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 385
T +++Y SSN + K F F IH P HCH
Sbjct: 246 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 279
>SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17)
Length = 1178
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 284 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 385
T +++Y SSN + K F F IH P HCH
Sbjct: 960 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 993
>SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1373
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 497 LVLGGVDRTGPSYLLHLSSWI 435
LVL VD+ PSY HL +W+
Sbjct: 916 LVLDSVDQLSPSYNAHLMNWL 936
>SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1317
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 284 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 385
T +++Y SSN + K F F IH P HCH
Sbjct: 719 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 752
>SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054)
Length = 1012
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 284 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 385
T +++Y SSN + K F F IH P HCH
Sbjct: 837 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 870
>SB_9246| Best HMM Match : RHS_repeat (HMM E-Value=5.5e-06)
Length = 530
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 284 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 385
T +++Y SSN + K F F IH P HCH
Sbjct: 372 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 405
>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
Length = 747
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 350 HITFPTCFKHCHSRKRSRSHGCIW*FIYRSMRINAVNMRDRFCQHL-PKPEQPL 508
H+ F F H RKR R++ + F+ + + + RFC L P QPL
Sbjct: 22 HVVFR--FSLEHKRKRKRNNATVRDFLALMLMFDRFTLVFRFCLRLRPSENQPL 73
>SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28)
Length = 271
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 350 HITFPTCFKHCHSRKRSRSHGCIW*FIYRSMRINAVNMRDRFCQHL-PKPEQPL 508
H+ F F H RKR R++ + F+ + + + RFC L P QPL
Sbjct: 84 HVVFR--FSLEHKRKRKRNNATVRDFLALMLMFDRFTLVFRFCLRLRPSENQPL 135
>SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 502 LLWFWEVLTEPVPHIYCIYPHGSVDKLP 419
L W W +T P+PH Y ++LP
Sbjct: 266 LSWIWPKITSPLPHNGTDYTQACNEELP 293
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,850,834
Number of Sequences: 59808
Number of extensions: 311522
Number of successful extensions: 790
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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