Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309H11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical pr...    64   8e-11
Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...    46   2e-05
AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome be...    43   2e-04
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    30   1.2  
Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical p...    28   4.7  
U00035-4|AAA50646.2|  482|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AC098856-4|AAL27248.2|  261|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical
           protein C47B2.4 protein.
          Length = 277

 Score = 63.7 bits (148), Expect = 8e-11
 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
 Frame = -2

Query: 466 PHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDL 287
           PH+Y    +G+    P+   GSGS AA+ + E  +K DM ++E +KLV+ A+ AG+  D 
Sbjct: 154 PHLYMCSANGTTMAFPFTAQGSGSYAAITILERDFKVDMTKDEAEKLVQRALEAGMHGDN 213

Query: 286 GSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQG-SYRYALGTTAVLKQRVIPLEV 122
            SG++++L +I  +          E   + +     Y++  G T VLK +    +V
Sbjct: 214 ASGNSLNLVIIEPSETVFKGPIVPEFCKRPEPNDLVYKFQAGATKVLKHKTYKYDV 269



 Score = 35.1 bits (77), Expect = 0.031
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = -1

Query: 521 YQGHIGAALVLGGVDRTGP 465
           YQG+IGA L++GGVD TGP
Sbjct: 136 YQGYIGAYLLIGGVDPTGP 154


>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 25/74 (33%), Positives = 38/74 (51%)
 Frame = -2

Query: 466 PHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDL 287
           P I+ +   G   +L   ++GSGSL A  + +  +K  M ++E +KL   AI    + D 
Sbjct: 180 PQIFKVDSEGDRCQLKVCSVGSGSLNAYGILDNHYKPKMTDDEARKLGLRAIMHATYRDS 239

Query: 286 GSGSNVDLCVIRNT 245
           GSG   +LC I  T
Sbjct: 240 GSGGVCNLCHITPT 253


>AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome beta
           subunit protein 1 protein.
          Length = 239

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 23/73 (31%), Positives = 33/73 (45%)
 Frame = -2

Query: 460 IYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGS 281
           +Y I   G V +      GSGS       ++ W+ ++  EE K +V+ A+    F D  S
Sbjct: 134 VYAIPIGGFVSRQRSTASGSGSTFVQGFLDSQWRPNLTLEECKAIVKQAVGLATFRDGSS 193

Query: 280 GSNVDLCVIRNTG 242
           G  V L VI   G
Sbjct: 194 GGVVRLAVINKAG 206


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 173 CSWYNCCA*AACNTSRGRIYFGTPNRSISAYGCGASNESLNVNN 42
           C  Y+ CA     ++ G+ Y    +  +  Y C ASN + NVNN
Sbjct: 367 CMPYDVCAGFGLASTEGQTYNPPQDEELEVYCCSASN-NCNVNN 409


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 173 CSWYNCCA*AACNTSRGRIYFGTPNRSISAYGCGASNESLNVNN 42
           C  Y+ CA     ++ G+ Y    +  +  Y C ASN + NVNN
Sbjct: 367 CMPYDVCAGFGLASTEGQTYNPPQDEELEVYCCSASN-NCNVNN 409


>Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical protein
            F54E12.2 protein.
          Length = 1091

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/78 (23%), Positives = 40/78 (51%)
 Frame = -2

Query: 346  EEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQGSYRYAL 167
            E+ G +++  ++AAG      +G N  + V  +  PA   + ++     G+K+  + + L
Sbjct: 982  EKGGARVMLLSLAAGGVGLNLTGGNHLVMVDLHWNPALEQQAFDRIYRMGQKKDVFIHRL 1041

Query: 166  GTTAVLKQRVIPLEVESI 113
             T   ++QRV+ L+ + +
Sbjct: 1042 VTKGTIEQRVVMLQKDKV 1059


>Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical
            protein F54E12.2 protein.
          Length = 1091

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/78 (23%), Positives = 40/78 (51%)
 Frame = -2

Query: 346  EEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQGSYRYAL 167
            E+ G +++  ++AAG      +G N  + V  +  PA   + ++     G+K+  + + L
Sbjct: 982  EKGGARVMLLSLAAGGVGLNLTGGNHLVMVDLHWNPALEQQAFDRIYRMGQKKDVFIHRL 1041

Query: 166  GTTAVLKQRVIPLEVESI 113
             T   ++QRV+ L+ + +
Sbjct: 1042 VTKGTIEQRVVMLQKDKV 1059


>U00035-4|AAA50646.2|  482|Caenorhabditis elegans Hypothetical
           protein R01H2.4 protein.
          Length = 482

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
 Frame = -2

Query: 478 TEPVPHIYCIYPHGSVDKLPYATMGSGSLAAM---AVFEAGWKRDMNEEEGKKLVRDAI- 311
           T P   IY   PH      P + +    +A M   ++F AG   D+        V DA+ 
Sbjct: 311 TSPKMSIYL--PHWKTKDFPSSRISQHLVATMNLNSLFVAGGFGDL-------AVEDAVP 361

Query: 310 -AAGIFNDLGSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQGSYR 176
            A G    +    +  L   RN+    YLRT EE  + GKK    R
Sbjct: 362 SATGDPKKVSHLQHFGLLSFRNSPKKTYLRTPEEKTLLGKKSRQSR 407


>AC098856-4|AAL27248.2|  261|Caenorhabditis elegans Hypothetical
           protein Y37F4.1 protein.
          Length = 261

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 235 QYLRTYEEANVKGKKQGS 182
           QYL+TY+  N KG+K G+
Sbjct: 92  QYLKTYQAINQKGRKLGT 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,871,678
Number of Sequences: 27780
Number of extensions: 239224
Number of successful extensions: 617
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)