Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309H11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   3.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   5.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   5.8  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 107 YQNRFYLERYYTLLKHSSCTKSISI 181
           Y N    E++ + LKHS+  K + I
Sbjct: 101 YSNMLNSEKHASFLKHSNIVKVLMI 125


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 15  FIVMFYSKLIVNI 53
           FI++FYS+L+ +I
Sbjct: 235 FIILFYSRLLSSI 247


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 15  FIVMFYSKLIVNI 53
           FI++FYS+L+ +I
Sbjct: 235 FIILFYSRLLSSI 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,720
Number of Sequences: 438
Number of extensions: 2962
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)