Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309H10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 31 0.74
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 30 0.98
01_02_0073 + 10834718-10834999,10835076-10835141,10835386-108354... 29 3.0
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 28 5.2
08_02_0480 + 17632176-17632814,17633838-17633906 27 6.9
09_03_0074 + 12103454-12103613,12104102-12104183,12105145-121052... 27 9.1
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 27 9.1
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814 27 9.1
04_03_0770 + 19420249-19420359,19421691-19421763,19421887-194219... 27 9.1
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 30.7 bits (66), Expect = 0.74
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +1
Query: 13 ESQAHFVASARRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPP 183
E++A A ARR SS+ S PP RKPP + ++R L P N P
Sbjct: 10 EAEADLQALARRFSFSSSSSPS-PSPSPPSSSRKPPLPPRRSPQKRPGLPTIPENGP 65
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 30.3 bits (65), Expect = 0.98
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 97 PRRHRKPPTL*KTRSRRRASLLVEPRNPP 183
PRRHR P + R RR A+ + P PP
Sbjct: 13 PRRHRHGPATPRRRRRRHAAAVATPPPPP 41
>01_02_0073 +
10834718-10834999,10835076-10835141,10835386-10835472,
10835699-10835760,10836142-10836151,10836162-10836170
Length = 171
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -3
Query: 231 RRLRSAWHRQLS*QHRWRISRLHQ*ARPPS*PGLLQRGRLPV 106
RR R AW + S RWR + L + ARP GL + RL V
Sbjct: 51 RRWRPAWRERRS---RWREAGLAREARPVEETGLAREARLVV 89
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 67 GRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLP 207
G S+LP RR R+PP RRR +P +PP LP
Sbjct: 10 GTSSSSSSLPSRRRRRPP---PRLGRRRGGDDQQPPHPPKASSEALP 53
>08_02_0480 + 17632176-17632814,17633838-17633906
Length = 235
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 56 SLRQEEEGCRATCRREGTGSRPRCRRPGQEGG 151
SLR +G + C G G+RP RRP + GG
Sbjct: 69 SLRLTAQG-QGDCPALGGGNRPNPRRPARPGG 99
>09_03_0074 +
12103454-12103613,12104102-12104183,12105145-12105200,
12105671-12106048,12106402-12106565
Length = 279
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 67 GRRRMQSNLPPRRHRKPPTL*KTRSRR-RASLLVEP 171
G R + PP R+ PTL + R RR RA+ + P
Sbjct: 133 GERLQPATAPPAERRRRPTLLQRRGRRCRAAAALPP 168
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 1 KCSAESQAHFVASA--RRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPR 174
K AE + +ASA RR H +GR R +S P R PP +RR S R
Sbjct: 198 KPEAEEEGWGMASAVERREHSRRSGRSRSRS--PARDRGSPPRRRSPPARRERSPAPRSR 255
Query: 175 NP 180
+P
Sbjct: 256 SP 257
>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
Length = 775
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 58 SSTGRRRMQSNLPPRRHRKPPT 123
SS GR R +S P R HR PP+
Sbjct: 20 SSGGRYRRRSPSPRRHHRAPPS 41
>04_03_0770 +
19420249-19420359,19421691-19421763,19421887-19421964,
19422223-19422284,19422404-19422472,19422672-19422700,
19422784-19422991,19423071-19423301,19424079-19424132,
19425344-19426292,19426853-19426863
Length = 624
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = -3
Query: 180 RISRLHQ*ARPPS*PGLLQRGRL----PVPSRRQVALHPS 73
RIS LH+ RPP+ G + G + P+ SRRQV P+
Sbjct: 501 RISELHELPRPPANVGAARPGLVGYSGPLVSRRQVPNVPT 540
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,406,479
Number of Sequences: 37544
Number of extensions: 198283
Number of successful extensions: 609
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -