Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309H10f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36288| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_50014| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44) 29 2.3
SB_34130| Best HMM Match : Spb1_C (HMM E-Value=9) 29 2.3
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_58872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_29376| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_22363| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_7128| Best HMM Match : Usp (HMM E-Value=8.3) 28 5.4
SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20) 27 7.1
SB_56092| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_26130| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_36288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 421
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 43 RRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQ 201
++ + TGR + L RRH+K TL R ++ +LL R +LL +
Sbjct: 301 KKAQILLTGRHKKAQTLLTRRHKKAQTLLTGRHKKAQTLLTRRRKKAQILLTR 353
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 64 TGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLL 195
T RR+ L RH+K TL TR R++A L+ R+ +L
Sbjct: 77 TRRRKKAQTLLTGRHKKAQTL-LTRRRKKAQTLLTGRHKKAQIL 119
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 64 TGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLL 195
TGR + L RRH+K TL TR ++A L+ R+ L
Sbjct: 110 TGRHKKAQILLTRRHKKAQTL-LTRRHKKAQTLLTRRHKKAQTL 152
>SB_50014| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 615
Score = 30.7 bits (66), Expect = 0.76
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 64 TGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLL 195
TGR + L RRH+K TL TR ++A +L+ R+ +L
Sbjct: 398 TGRHKKAQTLLTRRHKKAQTL-LTRRHKKAQILLTRRHKKAQIL 440
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 43 RRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLL 195
++ + TGR + L RRH+K TL TR ++A +L+ R+ +L
Sbjct: 446 KKAQILLTGRHKKAQILLTRRHKKAQTL-LTRRHKKAQILLTGRHKKAQIL 495
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 43 RRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLL 195
++ + TGR + L RRH+K TL TR ++A L+ R+ L
Sbjct: 358 KKAQILLTGRHKKAQTLLTRRHKKAQTL-LTRRHKKAQTLLTGRHKKAQTL 407
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 43 RRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLL 195
++ + TGR + L RRH+K L TR ++A +L+ R+ +L
Sbjct: 523 KKAQILLTGRHKKAQTLLTRRHKKAQIL-LTRRHKKAQILLTGRHKKAQIL 572
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 30.7 bits (66), Expect = 0.76
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +1
Query: 43 RRLHLSSTGRRRMQS---NLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLP 207
RR S RRR S + PPRR RK P+ R RRR+ +PP M + LP
Sbjct: 898 RRRDSYSPSRRRRDSPTPSPPPRRRRKSPSPSPPRRRRRS----PSNSPPPMRSSPLP 951
>SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)
Length = 350
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 117 RLPVPSRRQVALHPSSSCRREMQSSRRCYEM 25
R P R H +S+ RR+ QS R CY +
Sbjct: 291 RCQKPDLRSATRHTNSTIRRQSQSRRNCYSV 321
>SB_34130| Best HMM Match : Spb1_C (HMM E-Value=9)
Length = 416
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 43 RRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQ 201
++ + TGR + L RRH+K TL R ++ +LL +LL +
Sbjct: 48 KKAQILLTGRHKKAQTLLTRRHKKAQTLLTGRHKKAQTLLTRRHKKAQILLTR 100
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 43 RRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLL 195
++ + TGR + L RRH+K L TR ++A +L+ R+ +L
Sbjct: 224 KKAQILLTGRHKKAQTLLTRRHKKAQIL-LTRRHKKAQILLTGRHKKAQIL 273
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 43 RRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLL 195
++ + TGR + L RRH+K L TR ++A +L+ R+ L
Sbjct: 191 KKAQILLTGRHKKAQTLLTRRHKKAQIL-LTRRHKKAQILLTGRHKKAQTL 240
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 43 RRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLL 195
++ + TGR + L RRH+K TL TR ++A L+ R+ L
Sbjct: 257 KKAQILLTGRHKKAQILLTRRHKKAQTL-LTRRHKKAQTLLTRRHKKAQTL 306
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 43 RRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLL 195
++ + TGR + L RRH+K L TR ++A +L+ R+ L
Sbjct: 323 KKAQILLTGRHKKAQTLLTRRHKKAQIL-LTRRHKKAQILLTRRHKKAQTL 372
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 64 TGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLL 195
TGR + L RRH+K L TR ++A +L+ R+ L
Sbjct: 77 TGRHKKAQTLLTRRHKKAQIL-LTRRHKKAQILLTRRHKKAQTL 119
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 64 TGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLL 195
TGR + L RRH+K L TR ++A +L+ R+ +L
Sbjct: 154 TGRHKKAQILLTRRHKKAQIL-LTRRHKKAQILLTRRHKKAQIL 196
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 58 SSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNP 180
S GRRR +S P RR R P + RSR R+ R+P
Sbjct: 114 SPRGRRRSRSRSPVRRRRSPSL--ERRSRSRSGSRERRRSP 152
>SB_58872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 43 RRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLL 195
++ + TGR + L RRH+K L TR ++A +L+ R+ +L
Sbjct: 59 KKAQILLTGRHKKAQTLLTRRHKKAQIL-LTRRHKKAQILLTRRHKKAQIL 108
>SB_29376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 74 EGCRATCRREGTGSRPRC 127
E C CR E GSRP+C
Sbjct: 116 EDCNQICRMEDDGSRPKC 133
>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1318
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 44 EDCISLRQEEEGCRATCRREGTGSRPRCRRPGQE 145
E C S R+ + A+ EG G R RRP +E
Sbjct: 97 ESCGSGRESRDSIDASMNEEGVGQRDGRRRPSRE 130
>SB_22363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 47 DCISLRQEEEGCRATCRREGTGSRPRCRRPGQEGGRAY 160
+CIS + E C + + TG R CR G RAY
Sbjct: 43 ECISACTKHEECFVASQHKDTGRRSTCRIYGYNIFRAY 80
>SB_7128| Best HMM Match : Usp (HMM E-Value=8.3)
Length = 278
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +1
Query: 13 ESQAHFVASARRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTML 192
++Q ++ + TGR + L RRH+K L TR ++A +L+ R+
Sbjct: 71 KAQTLLTGRHKKAQILLTGRHKKAQTLLTRRHKKAQIL-LTRRHKKAQILLTRRHKKAQT 129
Query: 193 L 195
L
Sbjct: 130 L 130
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 64 TGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLL 195
T RR+ L RRHRK L TR + A +LV R+ L
Sbjct: 33 TRRRKKAQTLLTRRHRKAQIL-LTRRHKNAQILVTRRHKKAQTL 75
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 64 TGRRRMQSNLPPRRHRKPPTL*KTRSRRRAS 156
TGR + L RRH+K TL TR R++AS
Sbjct: 198 TGRHKKAQILLTRRHKKAQTL-LTRRRKKAS 227
>SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20)
Length = 524
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 73 RRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPP 183
RR + + PPRR R PP + RR R+PP
Sbjct: 462 RRTKKSTPPRRSRHPPRRSRHPPRRSRHPPRRSRHPP 498
>SB_56092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 211
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 43 RRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLL 195
++ + TGR + L RRH+K L TR ++A +L+ R+ +L
Sbjct: 37 KKAQILLTGRHKKAQILLTRRHKKAQIL-LTRRHKKAQILLTGRHKKAQIL 86
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 43 RRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLL 195
++ + TGR + L RRH+K TL TR ++A L+ R+ L
Sbjct: 70 KKAQILLTGRHKKAQILLTRRHKKAQTL-LTRRHKKAQTLLTRRHKKAQTL 119
>SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 37 SARRLHLSSTG-RRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPP 183
S+ + LSS G R + S PP R P + RSR+ + + P PP
Sbjct: 182 SSSSISLSSPGMRSSLGSIAPPSRTSTPRSRSTPRSRQEVASVPHPHPPP 231
>SB_26130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -1
Query: 176 FLGSTNKLARLLDLVFYNV 120
F+G T++LARL ++FY+V
Sbjct: 63 FIGRTSELARLFGILFYSV 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,183,008
Number of Sequences: 59808
Number of extensions: 200061
Number of successful extensions: 421
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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