Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309H10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81587-5|CAB04706.1|  369|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna b...    27   8.1  

>Z81587-5|CAB04706.1|  369|Caenorhabditis elegans Hypothetical
           protein T06G6.7 protein.
          Length = 369

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 437 NRPXXGVXGSLXGXAXSFXRGLFGRVYGXVEGIFG 333
           N P   V G L     +   GLF R+   +EGIFG
Sbjct: 189 NYPEFSVYGRLCNEFSAIHDGLFHRIQAVIEGIFG 223


>Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical
           protein F23D12.5 protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 97  PRRHRKPPTL*KTRSRRRASLLVEPRN 177
           P R RKP TL +T+S++R S    P N
Sbjct: 206 PSRKRKPETLIETKSKKRKSARGRPSN 232


>U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 5 protein.
          Length = 289

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = +1

Query: 61  STGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPP 183
           S  RRR  S  PPRR R+  +   +R RRRAS    PR  P
Sbjct: 90  SPPRRRRPSPSPPRRDRRDRS--GSRQRRRAS----PRRSP 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,670,648
Number of Sequences: 27780
Number of extensions: 140618
Number of successful extensions: 293
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)