Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309H10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.3  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 59  LRQEEEGCRATCRREGTGSRPRCRRPGQEGGRAYWWSR 172
           L Q +   +   RRE + S       G+EGG    WSR
Sbjct: 355 LGQSQSSPKFVARREESNSSSPSLDLGKEGGLEAQWSR 392


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 270 CCKATLSKVPGRWRRL 223
           CC++ LSK P R +R+
Sbjct: 400 CCRSWLSKFPTRSKRI 415


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 270 CCKATLSKVPGRWRRL 223
           CC++ LSK P R +R+
Sbjct: 400 CCRSWLSKFPTRSKRI 415


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 347 EGIFGXVKDLFPXQLRFGGXRXQP 276
           EG+F   +DL    L + G R  P
Sbjct: 278 EGLFASTRDLREIHLAYNGLRDLP 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,602
Number of Sequences: 438
Number of extensions: 1435
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)