Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309H10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    31   0.36 
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    31   0.36 
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    29   2.5  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    27   5.8  
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co...    27   7.7  

>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +1

Query: 58  SSTGRRRMQSNLPPRRHRKPP-----TL*KTRSRRRASLLVEPRNPPTMLLAQLP 207
           +S  R R  S+ PPRR+R PP      +  +  RRR+ L +  R+PP   L   P
Sbjct: 264 ASPSRGRSPSSPPPRRYRSPPRGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPP 318


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +1

Query: 58  SSTGRRRMQSNLPPRRHRKPP-----TL*KTRSRRRASLLVEPRNPPTMLLAQLP 207
           +S  R R  S+ PPRR+R PP      +  +  RRR+ L +  R+PP   L   P
Sbjct: 271 ASPSRGRSPSSPPPRRYRSPPRGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPP 325


>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 44  EDCISLRQEEEGCRATCRREGTGSRPRCR 130
           E C S  + E G R TCR++    R  CR
Sbjct: 733 EPCDSFNESEAGMRVTCRQKCGAPRTDCR 761


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 46  RLHLSST--GRRRMQSNLPPRRHRKPPTL*KTRS 141
           R H S T   R+R   + P RRHR PP   + RS
Sbjct: 338 RRHRSPTPPARQRRSPSPPARRHRSPPPARRRRS 371



 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 46  RLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNP 180
           R H S    RR +S  PP R R+ P+    R R  + L    R+P
Sbjct: 358 RRHRSPPPARRRRSPSPPARRRRSPSPPARRRRSPSPLYRRNRSP 402


>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
            contains Pfam profile PF00856: SET domain
          Length = 1423

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 55   LSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASL 159
            +S  GR+  QS++  R+H+    +    SRRR SL
Sbjct: 1059 ISQKGRKSSQSSILKRKHQLDEKISNVPSRRRLSL 1093


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,388,078
Number of Sequences: 28952
Number of extensions: 133494
Number of successful extensions: 264
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)