Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309H08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    89   5e-19
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    58   6e-10
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   2.2  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   3.0  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   3.9  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   5.2  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 88.6 bits (210), Expect = 5e-19
 Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 15/164 (9%)
 Frame = +2

Query: 5   IVDAYERRNADSHRVIGTLLGT--SDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYEL 178
           I+D   R++ ++ RVIGTLLGT   D   +E+ +CF VPH E ++QVE E+ Y   +Y L
Sbjct: 33  ILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVEVEMEYHRAMYHL 92

Query: 179 NGRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREP------------VHVTLDTSLA 322
           + + N  E +VGW+AT  ++   S++I   Y+    EP            VH+T++T ++
Sbjct: 93  HLKANPREVVVGWYATSPDLDAFSALIQNLYASPA-EPGTAPLGTYPHPCVHLTVNTDVS 151

Query: 323 GGRMGLRAYVCVPLGVPNG-KQGCMFTPVDVTLTCYEPEIVGLQ 451
              + ++ YV  P+G+       C F P   T+   E    GL+
Sbjct: 152 -SPLAIKTYVSSPVGITERLADSCAFVPTPFTIRDDEAVRSGLK 194


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 58.4 bits (135), Expect = 6e-10
 Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 5/153 (3%)
 Frame = +2

Query: 8   VDAYERR-NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA---ELNYAMDVYE 175
           VD+Y R       RV+G LLG ++  VV V N + +P +E          + N+   + E
Sbjct: 28  VDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMESMNE 87

Query: 176 LNGRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVC 355
           +  ++N++E +VGW+ TG ++      I+    +    PV V +D       +   AY  
Sbjct: 88  MFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVGLPTNAYFA 147

Query: 356 VPLGVPNG-KQGCMFTPVDVTLTCYEPEIVGLQ 451
           +     +G K    F  +  ++   E E +G++
Sbjct: 148 IDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVE 180


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 17  YERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 142
           Y+ R  DSHR I  L GT  +  +   +   + +K H  ++E
Sbjct: 483 YDHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELE 524


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 391 HVHSCRCHSHV 423
           H+H CRCH+++
Sbjct: 69  HIHCCRCHTYI 79


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 28  KCRFSQSYRHLIGHERQRSGG-SNQLLLRATQRTCRSSRSGT*LRDGCL 171
           + R S SY   I  ++  SGG + + L  A  RTC  S + T L + CL
Sbjct: 201 RSRSSSSYS--INKKKGTSGGQATRHLTYALSRTCSQSSNTTSLLESCL 247


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 198 LKVLLVGGRLAMK*PTTPLLYTSITPV 278
           LKV  V   +++  PTTP +Y S TPV
Sbjct: 376 LKVAPVSELISVIPPTTPQIYISRTPV 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,698
Number of Sequences: 5004
Number of extensions: 48260
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)