Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309H08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 116 9e-27
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 45 3e-05
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 45 3e-05
08_02_1145 - 24674319-24674403,24674691-24674746,24674885-246749... 33 0.11
02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528... 29 1.7
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866... 29 2.3
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 29 3.0
11_01_0433 - 3323372-3324616,3324708-3324905 28 4.0
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842... 28 4.0
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 28 5.2
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 28 5.2
11_01_0690 - 5690427-5690529,5693619-5693792,5694511-5694809 27 9.1
10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283... 27 9.1
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65... 27 9.1
07_03_0459 - 18422034-18422351 27 9.1
03_02_0338 + 7614199-7614450,7614518-7614703,7614815-7614927,761... 27 9.1
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 116 bits (280), Expect = 9e-27
Identities = 58/155 (37%), Positives = 88/155 (56%), Gaps = 1/155 (0%)
Frame = +2
Query: 5 IVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELN 181
I D+Y RR + RVIGTLLG+ G V V N + VPH E DQV ++ Y ++Y +
Sbjct: 29 ICDSYVRRPDQAERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVALDIEYHHNMYASH 88
Query: 182 GRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVP 361
+VN E IVGW++TG V+ S++IH++YSRE + P+H+T+DT G ++AY+
Sbjct: 89 HKVNPKEVIVGWFSTGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRGDASIKAYISSN 148
Query: 362 LGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKT 466
L + + F + + L E VG + + T
Sbjct: 149 LSLGDRHLAAQFQEIPLDLRMLEAGKVGFDILKST 183
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 45.2 bits (102), Expect = 3e-05
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Frame = +2
Query: 5 IVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE---AELNYAMDVY 172
IVD Y R D+ RV+G LLGTS +G V+VTN + VP +E + NY ++
Sbjct: 27 IVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMF 86
Query: 173 ELNGRVNS 196
+ R+N+
Sbjct: 87 SMFKRINA 94
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 45.2 bits (102), Expect = 3e-05
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 47 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNGRVNSSESIVGWW 220
V G LLG V+EVTNCF P +E ++ +A+ NY +++ VN + VGW+
Sbjct: 57 VTGQLLGLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVGWY 115
>08_02_1145 -
24674319-24674403,24674691-24674746,24674885-24674965,
24675063-24675137,24675418-24675479,24675857-24675950,
24676674-24676762,24676864-24677194
Length = 290
Score = 33.5 bits (73), Expect = 0.11
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +2
Query: 44 RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAM--DVYELNGRVNSSESIVGW 217
RV G ++G VE+ N F + D V L+ A EL +V ++GW
Sbjct: 68 RVFGCVIGVQRGRTVEIFNSFELV----LDPVSGTLDRAFLEKKQELYKKVFPDFYVLGW 123
Query: 218 WATGNEVTNHSSVIHEYYSRECREPVHVTLDTSL 319
++TG++V + IH+ PV++ L+ ++
Sbjct: 124 YSTGSDVRDTDMQIHKALMDINESPVYLLLNPAI 157
>02_05_0540 +
29852109-29852195,29852304-29852477,29852585-29852841,
29852954-29853125,29853513-29853551,29853647-29853715,
29853795-29853911,29854190-29854401,29854578-29854736,
29854810-29855009,29855100-29855266,29855346-29855442,
29855560-29855651,29855861-29856139
Length = 706
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -2
Query: 250 GVVGYFIASRPPTNNTFRGIDSSVQLVNIHRVIKF 146
G V + +AS+PP FR +++ Q+V I + +KF
Sbjct: 442 GSVNWKLASKPPIKLPFRKLENCNQVVKIGKELKF 476
>02_04_0414 -
22685981-22686178,22686374-22686465,22686580-22686676,
22686801-22686916,22687314-22687513,22687588-22687740,
22687960-22688171,22688403-22688519,22688613-22688687,
22688815-22688853,22689518-22689689,22689809-22690056,
22690151-22690324,22690418-22690504
Length = 659
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -2
Query: 250 GVVGYFIASRPPTNNTFRGIDSSVQLVNIHRVIKF 146
G+V + AS+PP FR +++ Q++ I + +KF
Sbjct: 439 GIVNWKQASKPPIIMPFRKVENGNQVIEIGKELKF 473
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 387 PCFPFGTPNGTQTYARKPIRPPASEVSRVTWTG 289
P PF +P + +AR P P +E+S TG
Sbjct: 599 PDSPFASPTKSAGFARDPFAPTEAEISATASTG 631
>11_01_0433 - 3323372-3324616,3324708-3324905
Length = 480
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 190 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 95
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 321 DAAVVLMLIHQFITFGFACTPLYFVWE-KAIG 351
>01_05_0108 +
18183250-18183336,18183451-18183962,18184074-18184245,
18184984-18185022,18185117-18185185,18185281-18185397,
18185842-18186056,18187085-18187240,18187328-18187527,
18187927-18188084,18188321-18188417,18188738-18188829,
18189018-18189191
Length = 695
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -2
Query: 250 GVVGYFIASRPPTNNTFRGIDSSVQLVNIHRVIKF 146
G V + +A+RPP FR +++ Q++ I + +KF
Sbjct: 469 GSVNWKMANRPPIKLPFRKVENCNQVLKIGKELKF 503
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 190 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 95
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 311 DAAVILMLIHQFITFGFACTPLYFVWE-KAIG 341
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 66 ARATKEWWK*PTASACHTKN-MPIKSK 143
A +KEWW +ACH N +P+K K
Sbjct: 508 AGLSKEWWGEAVLTACHVLNKIPMKHK 534
>11_01_0690 - 5690427-5690529,5693619-5693792,5694511-5694809
Length = 191
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +1
Query: 298 CYSGHFTGWRSNGFTCICLCTIRSAKWKARLHVHSCRC 411
CY GH TG GF + S+ W + H RC
Sbjct: 124 CYGGHSTGSNGEGFGGHPATSPPSSSWVSLPREHRDRC 161
>10_01_0267 -
2828966-2829340,2831164-2831629,2833390-2833487,
2833782-2834078,2834287-2834694
Length = 547
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 190 DSSVQLVNIHRVIKFRFDLIGMFFVW 113
D++V L+ IH+ I F F ++FVW
Sbjct: 327 DAAVVLMLIHQFITFGFACTPLYFVW 352
>08_01_0090 -
649631-651162,653189-655019,655313-655365,655731-655735,
656209-656411,656837-657292,657718-657805,657917-658017,
658404-658631,659128-659445,659528-659812,660148-660711
Length = 1887
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 236 VTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMG 337
V+ +SS HE++ E E V V+ +S AG R+G
Sbjct: 34 VSYNSSKRHEHFEEEDEEGVVVSATSSSAGHRVG 67
>07_03_0459 - 18422034-18422351
Length = 105
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 349 CLCTIRSAKWKARLHVHSC-RCHSHV 423
CL S +W+ + VHSC R H HV
Sbjct: 12 CLGRQPSRRWRGPVSVHSCSRSHPHV 37
>03_02_0338 +
7614199-7614450,7614518-7614703,7614815-7614927,
7615023-7615206,7615343-7615440,7616113-7616578,
7617342-7617683
Length = 546
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 190 DSSVQLVNIHRVIKFRFDLIGMFFVW 113
D++V L+ IH+ I F F ++FVW
Sbjct: 337 DAAVVLMLIHQFITFGFACTPLYFVW 362
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,697,073
Number of Sequences: 37544
Number of extensions: 344879
Number of successful extensions: 928
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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