Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309H08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   7e-04
SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.047
SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_4183| Best HMM Match : APH_6_hur (HMM E-Value=7.4)                  28   4.1  
SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)         27   7.1  
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.4  

>SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +2

Query: 2   QIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVP-HKEHADQVEAELNYAMDVYEL 178
           +I+   E   +    V G LLG      +E+TNCF  P +K   D+ + ++NY M+V   
Sbjct: 27  KIIKHCEEEGSSGDLVQGVLLGLIQDNRLEITNCFPFPSNKAGDDEDDDDVNYQMEVMRR 86

Query: 179 NGRVNSSESIVGWW 220
              VN     VGW+
Sbjct: 87  LRAVNIDHLHVGWY 100


>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 5   IVDAYERRN--ADSHRVIGTLLGTSDKGVVEVTNCFCVPHKE 124
           +VD + R        RV+G LLG+  KGV++V NCF VP  E
Sbjct: 21  VVDHFNRMGKVGSQKRVVGVLLGSRRKGVLDVANCFAVPFDE 62


>SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 353 CVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKT 466
           CV +GVP   +G MF+ +   +    PE VG+ V Q+T
Sbjct: 27  CVKMGVPGKTEGTMFSQIPCEVKLTGPEKVGVDVLQRT 64



 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 137 VEAELNYAMDVYELNGRVNSSESIVG 214
           V  EL YA  +YEL+ + N +E IVG
Sbjct: 1   VAVELEYAKSMYELSQKANPNEQIVG 26


>SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1892

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 155  YAMDVYELNGRVNSSESIVGWWATGNEVTNHSSVIH 262
            +A+ V+   G   +  ++ G   TG+ VT+H+  IH
Sbjct: 1157 HAVTVHTFRGHTVTDHTVTGHTVTGHTVTDHTVTIH 1192


>SB_4183| Best HMM Match : APH_6_hur (HMM E-Value=7.4)
          Length = 270

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 301 YSGHFTGWRSNGFTCICL 354
           ++GH   W SNG TC+ L
Sbjct: 201 FNGHTYSWHSNGVTCVLL 218


>SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 292 CPCYSGHFTGWRSNGFTCIC 351
           CPC +G     + +GFTCIC
Sbjct: 130 CPCKNGGHCVNKVDGFTCIC 149


>SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 292 CPCYSGHFTGWRSNGFTCIC 351
           CPC +G     + +GFTCIC
Sbjct: 130 CPCKNGGHCVNKVDGFTCIC 149


>SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)
          Length = 1224

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 408  MSLSRAMNLRL*VCKCARRLCLVEVAGRAAWPRARTW 518
            ++L  + +L L    CA  L +   +G  AWPR  TW
Sbjct: 969  IALRYSGDLELARAHCAFALEVYRSSGHCAWPRVATW 1005


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 484 ATSTRHSLLAHLQTYNLRFIARESDIYRSEHATLLS 377
           A  T HSLL+ L   ++   AR  D++   HA  LS
Sbjct: 333 AQETSHSLLSRLAIVHMVHEARGLDVHPKTHARFLS 368


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,976,091
Number of Sequences: 59808
Number of extensions: 411023
Number of successful extensions: 1457
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)