Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309H08f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 115 2e-26
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 78 4e-15
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 77 7e-15
At1g10840.1 68414.m01246 eukaryotic translation initiation facto... 46 2e-05
At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subuni... 36 0.017
At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni... 34 0.050
At5g01240.2 68418.m00032 amino acid permease, putative strong si... 30 0.82
At5g01240.1 68418.m00031 amino acid permease, putative strong si... 30 0.82
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s... 29 1.9
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 28 4.4
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 28 4.4
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 28 4.4
>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
SP|O04202 Eukaryotic translation initiation factor 3
subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 293
Score = 115 bits (277), Expect = 2e-26
Identities = 57/155 (36%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
Frame = +2
Query: 5 IVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELN 181
+ D + RR + RVIGTLLG+ G V++ N + VPH E +DQV +++Y ++ +
Sbjct: 38 VCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAVDIDYHHNMLASH 97
Query: 182 GRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVP 361
+VNS E+IVGW++TG V SS+IH++Y+RE P+H+T+DT G ++A+V
Sbjct: 98 LKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAFVSSN 157
Query: 362 LGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKT 466
L + + + F + V L + E VG V + T
Sbjct: 158 LSLGDRQLVAHFQEIPVDLRMVDAERVGFDVLKAT 192
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 77.8 bits (183), Expect = 4e-15
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 6/155 (3%)
Frame = +2
Query: 5 IVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE---AELNYAMDVY 172
IVD Y R DS RV+G LLG+S +GVV+VTN + VP +E + NY ++
Sbjct: 27 IVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMF 86
Query: 173 ELNGRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYV 352
+ R+N+ E +VGW++TG ++ + +H ++ PV V +D + +AY
Sbjct: 87 HMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTKAYY 146
Query: 353 CVPLGVPNGKQGC--MFTPVDVTLTCYEPEIVGLQ 451
V N Q +F V + +E E +G++
Sbjct: 147 AVEEVKENATQKSQKVFVHVSTEIAAHEVEEIGVE 181
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 77.0 bits (181), Expect = 7e-15
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Frame = +2
Query: 5 IVDAYERRNAD-SHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA---ELNYAMDVY 172
IVD Y R D S RV+G LLG+S +G V+VTN + VP +E + NY ++
Sbjct: 27 IVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDTSIWFLDHNYHESMF 86
Query: 173 ELNGRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYV 352
+ R+N+ E IVGW++TG ++ + +H ++ PV V +D + +AY
Sbjct: 87 HMFKRINAKEHIVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTKAYY 146
Query: 353 CVPLGVPNGKQGC--MFTPVDVTLTCYEPEIVGLQ 451
V N Q +F V + +E E +G++
Sbjct: 147 AVEEVKENATQKSQQVFVHVPTEIAAHEVEEIGVE 181
>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
SP|Q9C5Z2 Eukaryotic translation initiation factor 3
subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 337
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 47 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNGRVNSSESIVGWW 220
V G LLG V+EVTNCF P ++ +++EA+ NY +++ VN + VGW+
Sbjct: 47 VTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWY 105
>At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6B) identical to COP9 signalosome subunit 6
[Arabidopsis thaliana] GI:17940314, CSN complex subunit
6B [Arabidopsis thaliana] GI:18056667; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; supporting cDNA
gi|17940313|gb|AF434762.1|AF434762; identical to cDNA
CSN complex subunit 6B (CSN6B) GI:18056666
Length = 317
Score = 35.9 bits (79), Expect = 0.017
Identities = 23/92 (25%), Positives = 43/92 (46%)
Frame = +2
Query: 44 RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNGRVNSSESIVGWWA 223
RV G ++G VE+ N F + D ++ ++ EL +V ++GW++
Sbjct: 57 RVYGCVIGLQRGRTVEIFNSFELIFDPALDTLDR--SFLEKKQELYKKVFPDFYVLGWYS 114
Query: 224 TGNEVTNHSSVIHEYYSRECREPVHVTLDTSL 319
TG++ T IH+ PV+V L+ ++
Sbjct: 115 TGSDATESDMHIHKALMDINESPVYVLLNPAI 146
>At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6A) identical to CSN complex subunit 6A [Arabidopsis
thaliana] GI:18056665, COP9 complex subunit 6
[Arabidopsis thaliana] GI:15809663; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; identical to
cDNA CSN complex subunit 6A (CSN6A) GI:18056664
Length = 317
Score = 34.3 bits (75), Expect = 0.050
Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 1/136 (0%)
Frame = +2
Query: 44 RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNGRVNSSESIVGWWA 223
RV G ++G VE+ N F + + ++ ++ EL +V I+GW++
Sbjct: 57 RVYGCVIGVQRGRTVEIFNSFELLYDPSTQTLDR--SFLEKKQELYKKVFPDFYILGWYS 114
Query: 224 TGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVC-VPLGVPNGKQGCMFT 400
TG++ IH+ PV+V L+ ++ + L + L V +G +F
Sbjct: 115 TGSDAEESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIFA 174
Query: 401 PVDVTLTCYEPEIVGL 448
T+ E E + +
Sbjct: 175 HTSYTIETVEAERISV 190
>At5g01240.2 68418.m00032 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 408
Score = 30.3 bits (65), Expect = 0.82
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 190 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 86
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 238 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 271
>At5g01240.1 68418.m00031 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 488
Score = 30.3 bits (65), Expect = 0.82
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 190 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 86
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 318 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 351
>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
similarity to fimbrin-like protein AtFim2 [Arabidopsis
thaliana] GI:2737926; contains Pfam profile PF00307:
Calponin homology (CH) domain
Length = 654
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = -2
Query: 250 GVVGYFIASRPPTNNTFRGIDSSVQLVNIHRVIKF 146
G+V + ++S+PP F+ +++ Q+V + + +KF
Sbjct: 436 GIVNWKVSSKPPIKLPFKKVENCNQVVKLGKQLKF 470
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 258 YTSITPVNAVSLSMLL 305
YT++ PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 258 YTSITPVNAVSLSMLL 305
YT++ PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 258 YTSITPVNAVSLSMLL 305
YT++ PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,224,219
Number of Sequences: 28952
Number of extensions: 264342
Number of successful extensions: 675
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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