Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309H06f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   3.8  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    21   5.0  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   5.0  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 418 PLSESCLYRIVSVV*VHKHFYNTVXNNN 501
           P +ES +Y  V ++ VH+  ++   N N
Sbjct: 187 PRTESAVYEPVRIMGVHRPGFDNDCNKN 214


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +1

Query: 91  RKEPVIVNFLVIIILSRYLLNV*NRKKDCCKRPILYIVLHI*LLPNNVVNFVPYFSRLF 267
           +K P IVN     IL+  L N    KK   K+P+  + L   ++P +         R +
Sbjct: 13  QKAPKIVNSKYNSILNIALKNFRLCKKHKTKKPVQILALLQEIIPKSYFGTTTNLKRFY 71


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +1

Query: 91  RKEPVIVNFLVIIILSRYLLNV*NRKKDCCKRPILYIVLHI*LLPNNVVNFVPYFSRLF 267
           +K P IVN     IL+  L N    KK   K+P+  + L   ++P +         R +
Sbjct: 13  QKAPKIVNSKYNSILNIALKNFRLCKKHKTKKPVQILALLQEIIPKSYFGTTTNLKRFY 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,810
Number of Sequences: 336
Number of extensions: 2144
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)